Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   VNN38_RS01230 Genome accession   NZ_CP141697
Coordinates   243677..245482 (-) Length   601 a.a.
NCBI ID   WP_064305291.1    Uniprot ID   -
Organism   Lactococcus petauri strain R21-77-2     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 238677..250482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN38_RS01215 (VNN38_01215) alaS 239120..241738 (-) 2619 WP_019293084.1 alanine--tRNA ligase -
  VNN38_RS01220 (VNN38_01220) - 241988..242896 (-) 909 WP_019293085.1 peptidyl-prolyl cis-trans isomerase -
  VNN38_RS01225 (VNN38_01225) - 242994..243677 (-) 684 WP_019292044.1 O-methyltransferase -
  VNN38_RS01230 (VNN38_01230) pepF 243677..245482 (-) 1806 WP_064305291.1 oligoendopeptidase F Regulator
  VNN38_RS01235 (VNN38_01235) coiA 245466..246470 (-) 1005 WP_019293087.1 competence protein CoiA family protein Machinery gene
  VNN38_RS01240 (VNN38_01240) - 246546..247646 (-) 1101 WP_019293088.1 YdcF family protein -
  VNN38_RS01245 (VNN38_01245) - 247724..249145 (-) 1422 WP_019293089.1 NCS2 family permease -
  VNN38_RS01250 (VNN38_01250) - 249509..250333 (+) 825 WP_019293090.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 69656.21 Da        Isoelectric Point: 4.8185

>NTDB_id=918337 VNN38_RS01230 WP_064305291.1 243677..245482(-) (pepF) [Lactococcus petauri strain R21-77-2]
MAKKRDEIAENLTWDLSTVFENDAAWELELKRVSERLGTVKHYEGHLLDSAQSLLEITEIELEISRAVEKVYVYASMKHD
QDTQVSRYQEYEAKATNLYAKLGETFAFYEPEFLALTPERYASFRREEPKLEQYSHMFDRLFAKKEHILSPKEEKLLASA
SEIFGAAAETFEIFDNADIELPMIKDEKGQEVQLTHGNYISLMESKERQVRKAACKALYSNYEQYQHTYAKTLQTNVKVH
NFKAKMRGYHSARQAALSSNFIPEEVYDKLLESVNKYLHLLHRYIKLREQILGLENDLKMYDVYTPLSDLDYKFNYSEAV
EKSEEVLQIFGPEYANHVKKAFEERWIDVAENSGKRSGAYSGGCYDTNAFMLLNWQETLDDLFTLVHEMGHSMHSTFTRE
NQPYVYGDYPIFLAEIASTTNENILTESLLAESTDEKVRFAILNHWLDGFRGTVFRQSQFAEFEHEIHKADQEGKVLTSE
FMNQLYAGLNEKYYGLAAQENPEIQYEWARIPHFYYNFYVFQYATGFAAATYLAEAIVNGGPDAREKYLTYLKAGSSDYP
LAVIAQAGVDMEETTYLESAFAVFEKRLIELEKLVEKGAHL

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=918337 VNN38_RS01230 WP_064305291.1 243677..245482(-) (pepF) [Lactococcus petauri strain R21-77-2]
ATGGCAAAAAAACGTGATGAAATAGCTGAAAACTTAACTTGGGATTTGTCAACTGTGTTTGAAAACGATGCCGCCTGGGA
ACTAGAACTTAAAAGAGTTTCGGAAAGATTAGGGACGGTAAAGCACTACGAAGGACATCTTCTAGATAGCGCTCAAAGCT
TATTAGAAATCACGGAAATTGAGCTGGAAATCTCGCGTGCTGTGGAGAAGGTTTATGTCTATGCCTCAATGAAACATGAC
CAAGATACGCAAGTGAGTCGTTACCAAGAATACGAAGCCAAAGCCACAAATTTATATGCCAAGCTTGGAGAAACCTTTGC
TTTTTACGAGCCGGAATTCTTAGCTTTAACGCCAGAACGTTATGCAAGCTTTAGAAGAGAAGAACCCAAACTGGAGCAAT
ATTCTCATATGTTTGACCGCCTTTTTGCTAAAAAGGAGCATATCTTAAGTCCAAAAGAGGAAAAACTCTTAGCCAGTGCT
AGTGAGATTTTTGGTGCAGCCGCCGAAACTTTCGAAATTTTTGACAATGCTGATATTGAGCTTCCGATGATTAAAGATGA
AAAAGGGCAGGAAGTACAGCTGACACACGGTAATTATATCTCGCTCATGGAAAGTAAGGAACGTCAGGTGCGAAAGGCAG
CTTGTAAAGCCCTTTATAGCAACTATGAACAGTATCAGCACACTTATGCTAAAACGCTACAAACAAATGTAAAAGTCCAT
AATTTTAAGGCGAAGATGCGTGGCTACCATTCAGCCCGTCAAGCAGCTTTATCAAGTAATTTTATTCCGGAAGAAGTTTA
CGATAAGCTTTTGGAGTCGGTTAATAAATATTTGCATCTTTTACATCGTTATATTAAATTGCGTGAGCAAATTTTAGGGT
TAGAGAACGATTTAAAGATGTATGATGTCTATACACCCTTATCAGACTTGGATTATAAGTTTAACTACTCCGAGGCAGTG
GAGAAATCAGAAGAAGTTCTTCAAATTTTTGGACCTGAATATGCTAACCATGTTAAAAAAGCCTTTGAAGAGCGGTGGAT
TGATGTAGCTGAAAATAGCGGTAAACGTTCGGGTGCTTATTCAGGGGGATGCTATGATACAAATGCTTTCATGCTGTTAA
ACTGGCAAGAAACTTTGGATGATTTGTTCACCTTAGTACATGAAATGGGCCACAGTATGCATTCCACATTTACACGAGAA
AATCAACCTTATGTTTATGGGGACTATCCAATCTTTCTTGCAGAAATTGCTTCAACAACCAATGAGAATATCTTGACTGA
AAGTTTACTTGCGGAGTCGACAGATGAAAAAGTGCGGTTTGCTATTTTAAACCACTGGCTTGATGGTTTCCGTGGCACTG
TTTTCCGTCAAAGCCAATTTGCTGAATTTGAACATGAGATTCATAAAGCTGATCAAGAAGGAAAAGTTCTGACTAGCGAA
TTCATGAACCAGCTTTATGCGGGGCTGAATGAAAAATACTACGGTTTAGCTGCTCAGGAAAATCCTGAAATTCAATATGA
GTGGGCTCGCATTCCGCACTTCTATTATAATTTTTATGTCTTCCAATACGCAACAGGATTTGCCGCAGCAACTTATCTTG
CTGAGGCTATCGTTAATGGTGGCCCAGATGCGCGTGAAAAATACCTCACTTATCTCAAAGCAGGATCAAGTGATTATCCG
CTGGCTGTGATTGCTCAAGCAGGTGTGGATATGGAAGAAACAACATATTTAGAATCAGCATTTGCTGTTTTTGAAAAACG
TTTAATTGAGCTAGAAAAATTAGTCGAAAAAGGAGCCCATTTATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-582)

Oligopeptidase F (Peptidase_M3_N)

(112-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

64.393

100

0.644