Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   OCV20_RS16545 Genome accession   NZ_AP025470
Coordinates   3648798..3650321 (-) Length   507 a.a.
NCBI ID   WP_086775440.1    Uniprot ID   -
Organism   Vibrio coralliirubri strain DSM 27495     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3643798..3655321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV20_RS16520 - 3643914..3644177 (+) 264 WP_009848104.1 YihD family protein -
  OCV20_RS16525 ccoG 3644504..3645922 (+) 1419 WP_065584151.1 cytochrome c oxidase accessory protein CcoG -
  OCV20_RS16530 - 3645996..3646982 (+) 987 WP_086775442.1 serine/threonine protein kinase -
  OCV20_RS16535 - 3647038..3647637 (+) 600 WP_048610871.1 thiol:disulfide interchange protein DsbA/DsbL -
  OCV20_RS16540 - 3647778..3648734 (+) 957 WP_086775441.1 DUF2860 domain-containing protein -
  OCV20_RS16545 comM 3648798..3650321 (-) 1524 WP_086775440.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  OCV20_RS16550 ilvG 3650794..3652440 (+) 1647 WP_050633566.1 acetolactate synthase 2 catalytic subunit -
  OCV20_RS16555 ilvM 3652442..3652726 (+) 285 WP_017055442.1 acetolactate synthase 2 small subunit -
  OCV20_RS16560 - 3652739..3653707 (+) 969 WP_050622187.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55643.80 Da        Isoelectric Point: 7.4108

>NTDB_id=91803 OCV20_RS16545 WP_086775440.1 3648798..3650321(-) (comM) [Vibrio coralliirubri strain DSM 27495]
MGLAIIHSRASVGVEAPEVTVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIINSRFEFPSKRITVNLAPADLPKEGGR
FDLPIALGILVASDQLPTSKIAQHEFIGELALSGELRSVKGVLPATLAADSVERCLVVPHHNGDQAALVGKGAHKSAQTL
LEVCADMCGQAQLGLYRTEHHQTDVSELRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLRDLLPEMSD
DEAMETASVASLTQQEINQYNWKQRPFRSPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIIISRVAGKTRFPARFQLVGALNPSPTGYYEGNQARANPQIILRYLNRLSGPLLDRFDMSLEIPLLPKGMLAEGGDR
GETTQVVRQRVKQARELMLSRNHKSNALLGSREIEKYCPLRREDAEFLETALHRLGLSIRAYHRIIKVARTIADLDGNEQ
IEKKHLSEALGYRAMDRLLKQLMAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=91803 OCV20_RS16545 WP_086775440.1 3648798..3650321(-) (comM) [Vibrio coralliirubri strain DSM 27495]
ATGGGACTCGCGATAATTCATAGCCGAGCTAGTGTGGGTGTAGAGGCGCCAGAAGTGACCGTTGAGGTCCATATAAGCAA
CGGAATGCCTGGCTTTACGCTGGTGGGTCTGCCTGAAACAACGGTCAAGGAATCTAAAGATCGAGTGAGAAGTGCCATCA
TCAATTCTCGCTTTGAGTTTCCATCAAAAAGAATCACGGTCAACCTCGCCCCTGCCGATTTGCCCAAAGAAGGGGGCCGT
TTCGACCTGCCAATCGCGCTTGGAATTTTAGTGGCATCGGATCAGCTTCCGACATCAAAAATAGCTCAGCATGAATTCAT
CGGTGAGTTGGCGTTGTCAGGAGAATTACGCTCAGTAAAGGGCGTGTTGCCAGCGACGTTAGCCGCCGATAGTGTCGAGC
GATGTTTAGTTGTCCCACATCATAACGGTGATCAGGCTGCGCTGGTGGGCAAGGGAGCGCATAAATCAGCACAAACCTTG
TTGGAGGTTTGCGCTGACATGTGTGGACAGGCTCAGCTTGGCCTATATAGAACAGAACATCATCAGACTGATGTTTCAGA
GCTTCGCGACCTACAAGATATTATCGGCCAACAACAAGGCAAGCGAGCTCTGGAGATAGCCGCTGCTGGGAATCACAACT
TACTGTTCCTTGGCCCGCCCGGAACAGGCAAGACTATGCTCGCTTCTCGACTGCGTGACCTGTTACCTGAAATGAGTGAT
GACGAGGCGATGGAAACCGCGTCGGTGGCCTCGTTAACGCAACAAGAGATCAATCAATACAACTGGAAACAACGACCTTT
TCGGTCTCCTCACCATTCCAGTTCGATGGCGGCATTGGTCGGTGGAGGCTCGGTGCCTCGCCCCGGAGAGATCTCTTTGG
CGCATAACGGCTTATTGTTCTTGGATGAAATGCCGGAGTTTGAGCGCAAGGTGCTTGATTCATTGCGAGAGCCACTAGAG
TCTGGTGAGATCATTATCTCCCGTGTTGCGGGCAAAACTCGTTTCCCTGCTCGTTTCCAGTTAGTGGGTGCACTCAATCC
AAGTCCAACTGGTTATTACGAAGGTAATCAGGCGCGCGCCAACCCACAGATCATCCTGCGTTACCTTAATCGCTTATCTG
GCCCTTTGCTGGATCGATTCGATATGTCGTTAGAGATCCCTCTGTTGCCAAAAGGAATGTTAGCCGAAGGTGGCGACCGC
GGTGAAACGACTCAAGTAGTTAGGCAAAGGGTCAAACAGGCTCGAGAGTTGATGCTATCTCGCAACCATAAATCGAATGC
ACTGTTAGGTAGCCGAGAAATTGAGAAGTATTGCCCATTGAGGCGTGAGGATGCGGAGTTTCTGGAAACGGCGTTGCACC
GATTAGGTTTATCGATTCGTGCTTATCATCGAATCATTAAGGTGGCACGAACCATTGCCGACCTTGACGGTAACGAGCAG
ATCGAAAAGAAGCATCTATCGGAAGCGCTAGGCTATCGCGCGATGGATCGCTTGCTGAAACAACTCATGGCTCAAGCTGT
CTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

83.826

100

0.838
  comM Vibrio campbellii strain DS40M4

83.037

100

0.83
  comM Haemophilus influenzae Rd KW20

65.415

99.803

0.653
  comM Glaesserella parasuis strain SC1401

63.086

100

0.637
  comM Legionella pneumophila str. Paris

49.497

98.028

0.485
  comM Legionella pneumophila strain ERS1305867

49.497

98.028

0.485
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.688

99.803

0.426

Multiple sequence alignment