Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OCV20_RS15045 Genome accession   NZ_AP025470
Coordinates   3332404..3332961 (-) Length   185 a.a.
NCBI ID   WP_017061342.1    Uniprot ID   -
Organism   Vibrio coralliirubri strain DSM 27495     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3327404..3337961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV20_RS15030 csrD 3328798..3330813 (-) 2016 WP_050622244.1 RNase E specificity factor CsrD -
  OCV20_RS15035 - 3330970..3331479 (+) 510 WP_086774936.1 helix-turn-helix domain-containing protein -
  OCV20_RS15040 - 3331476..3332318 (+) 843 WP_108721729.1 IS3 family transposase -
  OCV20_RS15045 ssb 3332404..3332961 (-) 558 WP_017061342.1 single-stranded DNA-binding protein Machinery gene
  OCV20_RS15050 qstR 3333240..3333887 (+) 648 WP_029405754.1 LuxR C-terminal-related transcriptional regulator Regulator
  OCV20_RS15055 galU 3334045..3334917 (+) 873 WP_048618119.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  OCV20_RS15060 uvrA 3335067..3337898 (+) 2832 WP_086774532.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20400.52 Da        Isoelectric Point: 5.2358

>NTDB_id=91799 OCV20_RS15045 WP_017061342.1 3332404..3332961(-) (ssb) [Vibrio coralliirubri strain DSM 27495]
MASRGVNKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRAQGGAPAQGGMGNNQQQGGWGQPQQPQQQQQQYSAPAQQQPKA
PQQAPQQAQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 558 bp        

>NTDB_id=91799 OCV20_RS15045 WP_017061342.1 3332404..3332961(-) (ssb) [Vibrio coralliirubri strain DSM 27495]
ATGGCTAGCCGTGGAGTTAACAAAGTTATATTAGTGGGTAACCTAGGTAATGACCCTGAAATTCGTTACATGCCAAATGG
CGGCGCAGTAGCGAACATTACCATTGCAACGTCAGAGTCATGGCGTGATAAAGCAACTGGCGAGCAGCGTGAAAAAACAG
AATGGCACCGTGTTGCTCTGTTTGGCAAGTTAGCGGAAGTTGCTGGTGAGTACCTACGTAAAGGTTCTCAAGTTTACATT
GAAGGTCAACTTCAAACTCGTAAATGGCAAGATCAAAGCGGTCAAGATCGTTACACAACAGAAGTTGTTGTTCAAGGCTT
CAATGGTGTAATGCAAATGCTTGGCGGCCGTGCTCAAGGTGGTGCTCCTGCTCAAGGTGGCATGGGTAACAACCAGCAGC
AAGGTGGTTGGGGTCAGCCACAACAGCCACAACAACAGCAGCAACAATACAGTGCTCCAGCTCAACAGCAGCCGAAAGCA
CCTCAACAAGCTCCTCAGCAGGCTCAACCTCAATATAATGAGCCGCCAATGGATTTTGATGATGACATCCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

81.72

100

0.822
  ssb Glaesserella parasuis strain SC1401

57.447

100

0.584
  ssb Neisseria meningitidis MC58

47.568

100

0.476
  ssb Neisseria gonorrhoeae MS11

47.568

100

0.476

Multiple sequence alignment