Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   OCV20_RS15050 Genome accession   NZ_AP025470
Coordinates   3333240..3333887 (+) Length   215 a.a.
NCBI ID   WP_029405754.1    Uniprot ID   A0A1E5FWH4
Organism   Vibrio coralliirubri strain DSM 27495     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3328240..3338887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV20_RS15030 csrD 3328798..3330813 (-) 2016 WP_050622244.1 RNase E specificity factor CsrD -
  OCV20_RS15035 - 3330970..3331479 (+) 510 WP_086774936.1 helix-turn-helix domain-containing protein -
  OCV20_RS15040 - 3331476..3332318 (+) 843 WP_108721729.1 IS3 family transposase -
  OCV20_RS15045 ssb 3332404..3332961 (-) 558 WP_017061342.1 single-stranded DNA-binding protein Machinery gene
  OCV20_RS15050 qstR 3333240..3333887 (+) 648 WP_029405754.1 LuxR C-terminal-related transcriptional regulator Regulator
  OCV20_RS15055 galU 3334045..3334917 (+) 873 WP_048618119.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  OCV20_RS15060 uvrA 3335067..3337898 (+) 2832 WP_086774532.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 25222.36 Da        Isoelectric Point: 9.2504

>NTDB_id=91800 OCV20_RS15050 WP_029405754.1 3333240..3333887(+) (qstR) [Vibrio coralliirubri strain DSM 27495]
MRKSRYARTLHFLCIDPNDTYLHVKEIEKHLSIILYKMTPDELMLVDRKQSNRILLVDYREVPQLLIICPNLTVMWKNHE
IILFNVPQQLPTSELLTYGVLKGLFYNTEQKDKIARGLQEVIDGENWLPRKVTNQLLFYYRNMVNTNTTPTNVDLTIREI
QVIRCLQSGSSNTQIADDLFISEFTVKSHLYQIFRKLAVKNRVQAIAWANQNLLA

Nucleotide


Download         Length: 648 bp        

>NTDB_id=91800 OCV20_RS15050 WP_029405754.1 3333240..3333887(+) (qstR) [Vibrio coralliirubri strain DSM 27495]
ATGAGAAAATCACGATACGCTCGCACTTTGCATTTTCTGTGCATCGACCCAAACGACACCTATCTACATGTAAAAGAGAT
AGAAAAGCACTTATCTATTATTCTCTACAAAATGACGCCCGACGAATTAATGCTAGTTGATAGAAAGCAAAGTAACCGGA
TCTTGCTCGTTGATTACAGAGAGGTGCCACAGCTACTGATTATTTGTCCTAACCTGACTGTTATGTGGAAAAACCATGAG
ATCATCTTATTCAATGTCCCTCAACAACTTCCGACATCTGAGCTTCTTACCTATGGTGTACTAAAAGGGCTCTTTTACAA
CACCGAGCAAAAAGACAAGATTGCTCGTGGTCTTCAAGAAGTCATCGATGGTGAGAACTGGCTGCCAAGGAAGGTAACCA
ATCAACTGCTGTTTTATTATCGTAATATGGTCAATACCAACACGACACCAACCAATGTTGATTTAACCATTCGCGAGATT
CAGGTGATTCGCTGTCTTCAGTCAGGGTCATCAAACACACAAATCGCCGATGACTTGTTTATTAGTGAGTTCACGGTTAA
ATCTCACCTTTATCAGATATTCCGTAAGTTAGCGGTCAAAAATAGGGTTCAAGCCATTGCGTGGGCCAACCAGAACCTAC
TTGCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1E5FWH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

53.023

100

0.53
  qstR Vibrio parahaemolyticus RIMD 2210633

52.558

100

0.526
  qstR Vibrio cholerae strain A1552

48.598

99.535

0.484

Multiple sequence alignment