Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QRP18_RS13975 Genome accession   NZ_CP160382
Coordinates   3010930..3011460 (-) Length   176 a.a.
NCBI ID   WP_005466625.1    Uniprot ID   Q87LA3
Organism   Vibrio parahaemolyticus strain ST110-8     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3005930..3016460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRP18_RS13965 (QRP18_13965) - 3007833..3009440 (-) 1608 WP_206926102.1 site-specific integrase -
  QRP18_RS13970 (QRP18_13970) - 3009430..3010779 (-) 1350 WP_206926103.1 site-specific integrase -
  QRP18_RS13975 (QRP18_13975) ssb 3010930..3011460 (-) 531 WP_005466625.1 single-stranded DNA-binding protein Machinery gene
  QRP18_RS13980 (QRP18_13980) qstR 3011739..3012383 (+) 645 WP_005480993.1 LuxR C-terminal-related transcriptional regulator Regulator
  QRP18_RS13985 (QRP18_13985) galU 3012641..3013513 (+) 873 WP_005466627.1 UTP--glucose-1-phosphate uridylyltransferase GalU -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19563.62 Da        Isoelectric Point: 4.9269

>NTDB_id=917837 QRP18_RS13975 WP_005466625.1 3010930..3011460(-) (ssb) [Vibrio parahaemolyticus strain ST110-8]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPAMGGQQQQQGGWGQPQQPAQQQYNAPQQQQQAPQQPQ
QQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=917837 QRP18_RS13975 WP_005466625.1 3010930..3011460(-) (ssb) [Vibrio parahaemolyticus strain ST110-8]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCGGTAGCAAACATCACGATTGCTACTTCTGAGTCATGGCGTGACAAAGCGACTGGCGAACAGCGCGAAAAAACAG
AATGGCACCGTGTTGTGTTGTTCGGTAAGTTGGCAGAAGTGGCTGGTGAGTACCTGCGTAAAGGTTCACAAGTTTACGTT
GAAGGCCAACTTCAAACTCGTAAATGGCAAGACCAAAGTGGCCAAGATCGCTACTCAACAGAAGTTGTGGTTCAAGGTTT
CAATGGCGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGTGGCGCTCCTGCAATGGGCGGTCAACAACAGCAGCAAGGCG
GTTGGGGTCAACCTCAACAACCTGCTCAGCAGCAATACAATGCACCTCAACAGCAGCAACAGGCTCCGCAGCAACCACAA
CAGCAATACAACGAGCCACCAATGGATTTTGATGACGATATTCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LA3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

81.006

100

0.824
  ssb Glaesserella parasuis strain SC1401

57.143

100

0.614
  ssb Neisseria meningitidis MC58

48.023

100

0.483
  ssb Neisseria gonorrhoeae MS11

48.023

100

0.483