Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   QRP18_RS13980 Genome accession   NZ_CP160382
Coordinates   3011739..3012383 (+) Length   214 a.a.
NCBI ID   WP_005480993.1    Uniprot ID   Q87LA2
Organism   Vibrio parahaemolyticus strain ST110-8     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3006739..3017383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRP18_RS13965 (QRP18_13965) - 3007833..3009440 (-) 1608 WP_206926102.1 site-specific integrase -
  QRP18_RS13970 (QRP18_13970) - 3009430..3010779 (-) 1350 WP_206926103.1 site-specific integrase -
  QRP18_RS13975 (QRP18_13975) ssb 3010930..3011460 (-) 531 WP_005466625.1 single-stranded DNA-binding protein Machinery gene
  QRP18_RS13980 (QRP18_13980) qstR 3011739..3012383 (+) 645 WP_005480993.1 LuxR C-terminal-related transcriptional regulator Regulator
  QRP18_RS13985 (QRP18_13985) galU 3012641..3013513 (+) 873 WP_005466627.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  QRP18_RS13990 (QRP18_13990) uvrA 3013651..3016473 (+) 2823 WP_110178022.1 excinuclease ABC subunit UvrA Machinery gene

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24386.20 Da        Isoelectric Point: 8.7760

>NTDB_id=917838 QRP18_RS13980 WP_005480993.1 3011739..3012383(+) (qstR) [Vibrio parahaemolyticus strain ST110-8]
MRKSAYARKLFLISMEDDAAQKVASLEKYIDMSIPVISTDALMEAKPEHRNKILLIDFSEHKSLVQSIKNLPLVWKNFET
VVFNVPKRLTTDELLAFGQLKGLFYSEDSLEQVGEGLKGIVNGQNWLPRNVTSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=917838 QRP18_RS13980 WP_005480993.1 3011739..3012383(+) (qstR) [Vibrio parahaemolyticus strain ST110-8]
GTGAGAAAGTCGGCTTACGCAAGAAAGCTATTTCTGATTAGTATGGAAGACGATGCTGCGCAGAAAGTCGCATCATTAGA
AAAGTACATCGATATGAGCATTCCTGTAATCTCAACCGATGCCCTAATGGAAGCGAAACCCGAACATCGAAATAAAATTC
TACTCATTGACTTCAGTGAACATAAATCACTCGTTCAATCGATTAAAAACCTGCCATTGGTTTGGAAGAACTTTGAGACG
GTCGTGTTCAACGTTCCAAAACGCCTCACTACGGATGAACTGCTCGCCTTCGGTCAATTAAAAGGCTTGTTTTACAGCGA
AGATTCTTTAGAACAAGTAGGCGAAGGGCTGAAAGGCATTGTCAACGGGCAAAACTGGCTACCACGCAACGTAACCAGCC
AACTGCTGCACTACTATCGAAATGTGATAAATACTCACACCGCGCCAGCAACCGTCGATCTCACCATTCGCGAACTGCAA
GTGCTGCGTTGTCTGCAAGCTGGGGCATCGAATAGCCAGATGGCAGAAGAACTGTTTGTTAGCGAATTTACGATCAAGTC
GCACCTGTATCAGATCTTTAAAAAGCTCTCAGTGAAAAACCGAGTTCAAGCCATTGCTTGGGCCGATCAAAACTTGATGT
CTTAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LA2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

100

100

1
  qstR Vibrio campbellii strain DS40M4

89.252

100

0.893
  qstR Vibrio cholerae strain A1552

52.093

100

0.523