Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   U9O48_RS01580 Genome accession   NZ_CP141606
Coordinates   345598..346131 (+) Length   177 a.a.
NCBI ID   WP_285145916.1    Uniprot ID   -
Organism   Lelliottia sp. JS-SCA-14     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 340598..351131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U9O48_RS01565 aphA 341342..342055 (+) 714 WP_282494817.1 acid phosphatase AphA -
  U9O48_RS01570 - 342173..342526 (+) 354 WP_095280343.1 MmcQ/YjbR family DNA-binding protein -
  U9O48_RS01575 uvrA 342523..345351 (-) 2829 WP_324723375.1 excinuclease ABC subunit UvrA -
  U9O48_RS01580 ssb 345598..346131 (+) 534 WP_285145916.1 single-stranded DNA-binding protein SSB1 Machinery gene
  U9O48_RS01585 - 346248..347786 (-) 1539 WP_324723376.1 EAL domain-containing protein -
  U9O48_RS01590 - 347829..348590 (-) 762 WP_324723377.1 EAL domain-containing protein -
  U9O48_RS01595 - 348681..349967 (-) 1287 WP_282494812.1 sensor domain-containing diguanylate cyclase -
  U9O48_RS01600 - 350465..350716 (-) 252 WP_282494811.1 hypothetical protein -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 18863.89 Da        Isoelectric Point: 5.2456

>NTDB_id=917654 U9O48_RS01580 WP_285145916.1 345598..346131(+) (ssb) [Lelliottia sp. JS-SCA-14]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQAGAEKYTTEVVVNVGGTMQMLGGRQGGGAGAPAGGGQQQQGSWGQPQQPQGGNQFSGGAQSRPQQQSA
PAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=917654 U9O48_RS01580 WP_285145916.1 345598..346131(+) (ssb) [Lelliottia sp. JS-SCA-14]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCGGTGAATATCTGCGTAAAGGTTCTCAGGTGTATATC
GAAGGTCAGCTTCGTACCCGTAAATGGACCGACCAGGCCGGTGCAGAGAAGTACACCACCGAAGTGGTAGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGTGGTGCAGGTGCGCCAGCAGGCGGCGGTCAGCAGCAGCAGGGTA
GCTGGGGCCAGCCTCAGCAGCCTCAGGGCGGCAACCAGTTCAGTGGCGGCGCGCAGTCTCGTCCGCAGCAGCAGTCCGCT
CCGGCACCGTCTAACGAACCACCAATGGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

75.138

100

0.768
  ssb Glaesserella parasuis strain SC1401

55.738

100

0.576
  ssb Neisseria meningitidis MC58

46.067

100

0.463
  ssb Neisseria gonorrhoeae MS11

46.067

100

0.463
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.556

100

0.362