Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   OCV52_RS14410 Genome accession   NZ_AP025465
Coordinates   3110999..3111610 (-) Length   203 a.a.
NCBI ID   WP_137406902.1    Uniprot ID   -
Organism   Vibrio chagasii strain LMG 21353     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3105999..3116610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV52_RS14390 aroB 3106934..3108022 (-) 1089 WP_004737166.1 3-dehydroquinate synthase -
  OCV52_RS14395 aroK 3108048..3108566 (-) 519 WP_004737165.1 shikimate kinase AroK -
  OCV52_RS14400 pilQ 3108743..3110458 (-) 1716 WP_137406900.1 type IV pilus secretin PilQ Machinery gene
  OCV52_RS14405 pilP 3110494..3111012 (-) 519 WP_137406901.1 pilus assembly protein PilP Machinery gene
  OCV52_RS14410 pilO 3110999..3111610 (-) 612 WP_137406902.1 type 4a pilus biogenesis protein PilO Machinery gene
  OCV52_RS14415 pilN 3111603..3112202 (-) 600 WP_137406903.1 PilN domain-containing protein Machinery gene
  OCV52_RS14420 pilM 3112186..3113211 (-) 1026 WP_137406904.1 type IV pilus assembly protein PilM Machinery gene
  OCV52_RS14425 - 3113363..3115924 (+) 2562 WP_170222424.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 23423.86 Da        Isoelectric Point: 4.4188

>NTDB_id=91753 OCV52_RS14410 WP_137406902.1 3110999..3111610(-) (pilO) [Vibrio chagasii strain LMG 21353]
MASFQNMMSLQELDIDEITEWPLLPQLLVILLLVALIQGLGTWFYILPLDDELQQMKQQEQTLKATLRIKANKVAALPKL
QGQLDELTSRYDYLLEQLPVQKELASMLASVNELGLDNSLTFTRIDWGEKQNKAFLYRLPLNIELTGDYHEIGDFSAAIA
KLPRIISFDDVNWQRVSQESSTLHFRVRAYTYQFKSEVNDEAQ

Nucleotide


Download         Length: 612 bp        

>NTDB_id=91753 OCV52_RS14410 WP_137406902.1 3110999..3111610(-) (pilO) [Vibrio chagasii strain LMG 21353]
ATGGCTAGCTTTCAAAACATGATGAGCCTGCAAGAGCTTGATATCGATGAGATCACCGAGTGGCCACTGTTGCCTCAGTT
ATTGGTGATTCTATTGCTGGTGGCGCTTATTCAAGGGCTGGGAACCTGGTTCTATATTTTGCCCTTGGATGACGAGCTAC
AACAGATGAAGCAGCAAGAGCAGACCTTGAAAGCAACACTGCGCATCAAAGCCAATAAGGTTGCCGCTTTACCTAAGCTT
CAGGGCCAACTGGATGAACTGACTAGTCGCTATGATTACCTGTTAGAACAGCTGCCCGTGCAAAAAGAGTTGGCGAGCAT
GTTGGCATCAGTCAATGAGCTCGGTTTAGATAACTCACTAACCTTTACCCGAATTGACTGGGGTGAAAAACAGAACAAAG
CCTTCCTATACCGCTTGCCTCTTAACATCGAACTGACTGGTGATTACCACGAGATAGGCGACTTCTCTGCAGCTATCGCC
AAGCTCCCGCGAATCATCAGCTTTGATGATGTGAATTGGCAGAGAGTGAGCCAAGAAAGCAGCACACTTCACTTCAGGGT
TCGAGCTTATACCTACCAGTTTAAATCGGAGGTCAACGATGAGGCCCAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(53-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Vibrio cholerae strain A1552

77.949

96.059

0.749
  pilO Vibrio campbellii strain DS40M4

71.958

93.103

0.67

Multiple sequence alignment