Detailed information
Bioinformatically predicted
Overview
| Name | pilP | Type | Machinery gene |
| Locus tag | OCV52_RS14405 | Genome accession | NZ_AP025465 |
| Coordinates | 3110494..3111012 (-) | Length | 172 a.a. |
| NCBI ID | WP_137406901.1 | Uniprot ID | A0A7V7NWC0 |
| Organism | Vibrio chagasii strain LMG 21353 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3105494..3116012
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OCV52_RS14390 | aroB | 3106934..3108022 (-) | 1089 | WP_004737166.1 | 3-dehydroquinate synthase | - |
| OCV52_RS14395 | aroK | 3108048..3108566 (-) | 519 | WP_004737165.1 | shikimate kinase AroK | - |
| OCV52_RS14400 | pilQ | 3108743..3110458 (-) | 1716 | WP_137406900.1 | type IV pilus secretin PilQ | Machinery gene |
| OCV52_RS14405 | pilP | 3110494..3111012 (-) | 519 | WP_137406901.1 | pilus assembly protein PilP | Machinery gene |
| OCV52_RS14410 | pilO | 3110999..3111610 (-) | 612 | WP_137406902.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| OCV52_RS14415 | pilN | 3111603..3112202 (-) | 600 | WP_137406903.1 | PilN domain-containing protein | Machinery gene |
| OCV52_RS14420 | pilM | 3112186..3113211 (-) | 1026 | WP_137406904.1 | type IV pilus assembly protein PilM | Machinery gene |
| OCV52_RS14425 | - | 3113363..3115924 (+) | 2562 | WP_170222424.1 | penicillin-binding protein 1A | - |
Sequence
Protein
Download Length: 172 a.a. Molecular weight: 19122.39 Da Isoelectric Point: 10.6250
>NTDB_id=91752 OCV52_RS14405 WP_137406901.1 3110494..3111012(-) (pilP) [Vibrio chagasii strain LMG 21353]
MRPNSALYSTLLLLMLSGCKANQDSLEDFVVQVELKAKKEVEQLVPATEFSAATYQRRAFRPPFELPKEAIVQNQPLVKK
DCWQPSARARSGKLEKYPLSKLRLKGVMGSGTSVFGLVQTPKGNVVNVKKGQLIGLNNGRVTKVTSQYVLINETLPDGLG
CWHKRNVRLALK
MRPNSALYSTLLLLMLSGCKANQDSLEDFVVQVELKAKKEVEQLVPATEFSAATYQRRAFRPPFELPKEAIVQNQPLVKK
DCWQPSARARSGKLEKYPLSKLRLKGVMGSGTSVFGLVQTPKGNVVNVKKGQLIGLNNGRVTKVTSQYVLINETLPDGLG
CWHKRNVRLALK
Nucleotide
Download Length: 519 bp
>NTDB_id=91752 OCV52_RS14405 WP_137406901.1 3110494..3111012(-) (pilP) [Vibrio chagasii strain LMG 21353]
ATGAGGCCCAATAGCGCGCTCTATTCAACGTTGTTACTGCTGATGTTGTCGGGCTGCAAAGCCAATCAAGACTCACTAGA
AGACTTCGTGGTGCAGGTTGAGCTCAAAGCGAAAAAAGAAGTTGAGCAGCTTGTTCCTGCGACTGAGTTCTCAGCCGCTA
CCTATCAACGACGTGCTTTTCGTCCTCCCTTTGAACTACCCAAAGAAGCGATCGTGCAAAACCAGCCCTTGGTGAAGAAA
GATTGCTGGCAACCTAGCGCTCGTGCTCGCAGTGGCAAGTTAGAGAAATACCCACTCAGTAAATTGCGCTTGAAAGGTGT
GATGGGCAGTGGAACGAGTGTGTTTGGGCTTGTACAAACGCCTAAGGGCAATGTCGTCAATGTGAAAAAAGGCCAGCTTA
TCGGCTTAAACAACGGCCGAGTTACTAAGGTAACGAGCCAGTACGTTCTGATTAATGAAACTCTTCCAGATGGCTTAGGT
TGTTGGCATAAGCGCAACGTTAGGCTGGCTCTGAAATAA
ATGAGGCCCAATAGCGCGCTCTATTCAACGTTGTTACTGCTGATGTTGTCGGGCTGCAAAGCCAATCAAGACTCACTAGA
AGACTTCGTGGTGCAGGTTGAGCTCAAAGCGAAAAAAGAAGTTGAGCAGCTTGTTCCTGCGACTGAGTTCTCAGCCGCTA
CCTATCAACGACGTGCTTTTCGTCCTCCCTTTGAACTACCCAAAGAAGCGATCGTGCAAAACCAGCCCTTGGTGAAGAAA
GATTGCTGGCAACCTAGCGCTCGTGCTCGCAGTGGCAAGTTAGAGAAATACCCACTCAGTAAATTGCGCTTGAAAGGTGT
GATGGGCAGTGGAACGAGTGTGTTTGGGCTTGTACAAACGCCTAAGGGCAATGTCGTCAATGTGAAAAAAGGCCAGCTTA
TCGGCTTAAACAACGGCCGAGTTACTAAGGTAACGAGCCAGTACGTTCTGATTAATGAAACTCTTCCAGATGGCTTAGGT
TGTTGGCATAAGCGCAACGTTAGGCTGGCTCTGAAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilP | Vibrio cholerae strain A1552 |
65 |
93.023 |
0.605 |
| pilP | Vibrio campbellii strain DS40M4 |
54.438 |
98.256 |
0.535 |