Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   VI604_RS01165 Genome accession   NZ_CP141574
Coordinates   106319..107839 (-) Length   506 a.a.
NCBI ID   WP_004181640.1    Uniprot ID   A0A0C7KD86
Organism   Klebsiella pneumoniae strain KP35_L8_42.22_ST2096_OXA232     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 101319..112839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VI604_RS01155 (VI604_01155) hdfR 105015..105836 (-) 822 WP_004181639.1 HTH-type transcriptional regulator HdfR -
  VI604_RS01160 (VI604_01160) - 105955..106293 (+) 339 WP_004146520.1 DUF413 domain-containing protein -
  VI604_RS01165 (VI604_01165) comM 106319..107839 (-) 1521 WP_004181640.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  VI604_RS01170 (VI604_01170) ilvL 108194..108292 (+) 99 WP_001311244.1 ilv operon leader peptide -
  VI604_RS26760 ilvX 108380..108430 (+) 51 WP_175426296.1 peptide IlvX -
  VI604_RS01175 (VI604_01175) ilvG 108433..110079 (+) 1647 WP_002883142.1 acetolactate synthase 2 catalytic subunit -
  VI604_RS01180 (VI604_01180) ilvM 110076..110333 (+) 258 WP_002883170.1 acetolactate synthase 2 small subunit -
  VI604_RS01185 (VI604_01185) ilvE 110350..111279 (+) 930 WP_002883171.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55186.61 Da        Isoelectric Point: 8.6038

>NTDB_id=917402 VI604_RS01165 WP_004181640.1 106319..107839(-) (comM) [Klebsiella pneumoniae strain KP35_L8_42.22_ST2096_OXA232]
MSLAIVYTRAALGIEAPLITVEVHLSNGLPGLTMVGLPETTVKEARDRVRSALINSGYAFPAKKITINLAPADLPKEGGR
YDLPIALALLVASEQLNTTRLNQYEFVGELALTGGLRGVPGAIPSAMEAIKAGRRIVVSSDNAAEVGLIGGSDCLVADHL
QEVCAFLAGQTSLSPPLAEAPARDERYEDLLDVIGQQQGKRALEIVAAGGHNLLLIGPPGTGKTMLASRLPGLLPPLSNQ
EALESAAIQSLVNLHTAKTRWRQRPFRAPHHSASLAAMVGGGSIPVPGEISLAHNGVLFLDELPEFERRVLDALREPIES
GKIHISRSRAKINYPARFQLIAAMNPSPTGHYQGKHNRASPEQTLRYLGRLSGPFLDRFDLSLEIPLPPPGILSQGSQGE
ESSATVRQRVLAARERQMLRQNKLNAHLENREMKNCCRLRREDAVWLEQTLTQLGLSIRAWQRLLKVARTIADLAEVEEI
ERCHLQEALSYRAIDRMLNHLQKMMA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=917402 VI604_RS01165 WP_004181640.1 106319..107839(-) (comM) [Klebsiella pneumoniae strain KP35_L8_42.22_ST2096_OXA232]
ATGTCGCTCGCTATCGTCTATACTCGCGCGGCGCTCGGTATCGAAGCGCCATTGATTACCGTTGAGGTTCATCTCAGCAA
CGGTCTTCCTGGTCTAACTATGGTCGGGCTGCCGGAAACCACCGTGAAAGAGGCCCGCGACCGGGTCCGCAGCGCCCTGA
TCAACAGCGGCTACGCTTTTCCTGCGAAGAAGATAACCATTAACCTGGCGCCAGCGGATCTGCCCAAAGAAGGCGGACGA
TACGATCTGCCCATCGCTCTCGCGCTTCTCGTTGCCTCAGAGCAGCTCAACACGACGCGACTGAATCAATATGAGTTTGT
GGGCGAACTCGCCCTTACAGGTGGGTTACGAGGCGTTCCAGGGGCGATCCCCAGCGCAATGGAGGCCATCAAAGCCGGCC
GGCGCATTGTCGTCTCCTCTGACAATGCGGCGGAGGTCGGCCTGATCGGCGGCAGCGATTGTCTGGTCGCCGACCATCTG
CAGGAGGTTTGCGCATTTCTTGCGGGGCAGACATCGCTTTCGCCGCCTCTCGCCGAGGCGCCTGCTCGGGATGAACGCTA
CGAAGATCTGCTCGATGTTATCGGCCAGCAGCAGGGCAAACGAGCGCTGGAGATTGTGGCCGCCGGTGGTCACAATCTGC
TCCTGATAGGCCCGCCCGGGACCGGGAAAACCATGCTAGCCAGCCGACTCCCCGGTCTCCTGCCGCCATTAAGCAATCAG
GAAGCGCTGGAGAGCGCGGCCATACAGAGTCTGGTCAACCTCCACACCGCAAAGACGCGGTGGCGTCAGAGGCCGTTCCG
CGCCCCCCACCATAGCGCCTCGCTGGCAGCGATGGTGGGCGGCGGCTCGATACCGGTCCCCGGTGAGATTTCCCTGGCCC
ATAATGGCGTGCTGTTTCTTGATGAACTGCCGGAGTTTGAGCGGCGGGTACTGGATGCGCTACGCGAACCCATTGAGTCA
GGCAAGATCCACATATCACGCTCGCGCGCCAAAATTAATTATCCGGCGCGCTTTCAGCTTATTGCAGCGATGAATCCAAG
CCCGACAGGACATTATCAGGGTAAACATAATCGTGCATCGCCGGAGCAGACATTGCGCTACCTTGGACGCCTGTCAGGCC
CCTTCCTCGACCGCTTCGATCTTTCCTTAGAGATCCCATTGCCGCCGCCAGGAATACTGAGTCAGGGCTCGCAGGGCGAA
GAATCGAGCGCAACGGTCCGGCAGCGGGTGCTGGCGGCGCGTGAACGACAAATGCTCAGGCAAAATAAACTCAATGCCCA
TCTTGAGAATCGTGAAATGAAGAACTGCTGTCGCTTAAGGCGGGAGGATGCTGTCTGGCTGGAACAGACGCTAACGCAGC
TGGGGCTTTCTATTCGCGCCTGGCAGCGTCTGTTAAAGGTTGCGAGAACCATTGCCGATCTGGCAGAGGTTGAAGAGATT
GAACGCTGTCATTTGCAGGAGGCGCTCAGCTATCGGGCAATTGATCGGATGCTCAACCATCTGCAGAAAATGATGGCGTA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0C7KD86

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

60.078

100

0.607
  comM Glaesserella parasuis strain SC1401

59.725

100

0.601
  comM Vibrio cholerae strain A1552

60.04

99.407

0.597
  comM Vibrio campbellii strain DS40M4

59.524

99.605

0.593
  comM Legionella pneumophila str. Paris

50.201

98.419

0.494
  comM Legionella pneumophila strain ERS1305867

50.201

98.419

0.494
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.685

100

0.449