Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | OCV52_RS01555 | Genome accession | NZ_AP025465 |
| Coordinates | 338472..339026 (+) | Length | 184 a.a. |
| NCBI ID | WP_137407229.1 | Uniprot ID | A0A7V7NVN4 |
| Organism | Vibrio chagasii strain LMG 21353 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 333472..344026
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OCV52_RS01540 | uvrA | 333534..336365 (-) | 2832 | WP_137407231.1 | excinuclease ABC subunit UvrA | - |
| OCV52_RS01545 | galU | 336515..337387 (-) | 873 | WP_019826989.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| OCV52_RS01550 | qstR | 337545..338192 (-) | 648 | WP_137407230.1 | LuxR C-terminal-related transcriptional regulator | Regulator |
| OCV52_RS01555 | ssb | 338472..339026 (+) | 555 | WP_137407229.1 | single-stranded DNA-binding protein | Machinery gene |
| OCV52_RS01560 | csrD | 339188..341203 (+) | 2016 | WP_137407228.1 | RNase E specificity factor CsrD | - |
| OCV52_RS01565 | - | 341206..342648 (+) | 1443 | WP_137407227.1 | PilN domain-containing protein | - |
| OCV52_RS01570 | pilO | 342648..343295 (+) | 648 | WP_004740858.1 | type 4a pilus biogenesis protein PilO | - |
| OCV52_RS01575 | - | 343288..343620 (+) | 333 | WP_137407226.1 | MSHA biogenesis protein MshK | - |
Sequence
Protein
Download Length: 184 a.a. Molecular weight: 20219.33 Da Isoelectric Point: 5.2358
>NTDB_id=91724 OCV52_RS01555 WP_137407229.1 338472..339026(+) (ssb) [Vibrio chagasii strain LMG 21353]
MASRGVNKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRAQGGAPAQGGMGGQQQQGGWGQPQQPQQQQQYSAPAQQQSKAP
QQAPQQAQPQYNEPPMDFDDDIPF
MASRGVNKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRAQGGAPAQGGMGGQQQQGGWGQPQQPQQQQQYSAPAQQQSKAP
QQAPQQAQPQYNEPPMDFDDDIPF
Nucleotide
Download Length: 555 bp
>NTDB_id=91724 OCV52_RS01555 WP_137407229.1 338472..339026(+) (ssb) [Vibrio chagasii strain LMG 21353]
ATGGCTAGCCGTGGAGTTAACAAAGTTATATTAGTGGGTAACCTAGGTAATGACCCAGAAATTCGTTACATGCCAAATGG
CGGCGCAGTAGCGAACATTACCATTGCAACGTCAGAGTCATGGCGTGATAAAGCAACTGGCGAACAGCGTGAAAAAACAG
AATGGCACCGTGTTGCTCTGTTTGGCAAGTTAGCTGAAGTTGCTGGAGAGTACCTACGTAAAGGTTCTCAAGTTTACATT
GAAGGTCAACTGCAAACTCGTAAATGGCAAGATCAAAGCGGTCAAGATCGCTACACAACTGAAGTTGTGGTTCAAGGCTT
TAACGGCGTAATGCAAATGCTAGGAGGTCGTGCTCAAGGTGGCGCACCAGCTCAAGGCGGCATGGGTGGCCAGCAACAGC
AAGGCGGTTGGGGTCAACCTCAGCAGCCGCAACAGCAGCAGCAATACAGTGCCCCAGCTCAACAGCAGTCGAAAGCACCT
CAACAAGCTCCTCAGCAGGCTCAACCTCAATATAATGAGCCTCCGATGGATTTTGATGATGACATCCCATTTTAA
ATGGCTAGCCGTGGAGTTAACAAAGTTATATTAGTGGGTAACCTAGGTAATGACCCAGAAATTCGTTACATGCCAAATGG
CGGCGCAGTAGCGAACATTACCATTGCAACGTCAGAGTCATGGCGTGATAAAGCAACTGGCGAACAGCGTGAAAAAACAG
AATGGCACCGTGTTGCTCTGTTTGGCAAGTTAGCTGAAGTTGCTGGAGAGTACCTACGTAAAGGTTCTCAAGTTTACATT
GAAGGTCAACTGCAAACTCGTAAATGGCAAGATCAAAGCGGTCAAGATCGCTACACAACTGAAGTTGTGGTTCAAGGCTT
TAACGGCGTAATGCAAATGCTAGGAGGTCGTGCTCAAGGTGGCGCACCAGCTCAAGGCGGCATGGGTGGCCAGCAACAGC
AAGGCGGTTGGGGTCAACCTCAGCAGCCGCAACAGCAGCAGCAATACAGTGCCCCAGCTCAACAGCAGTCGAAAGCACCT
CAACAAGCTCCTCAGCAGGCTCAACCTCAATATAATGAGCCTCCGATGGATTTTGATGATGACATCCCATTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
82.162 |
100 |
0.826 |
| ssb | Glaesserella parasuis strain SC1401 |
57.447 |
100 |
0.587 |
| ssb | Neisseria meningitidis MC58 |
46.448 |
99.457 |
0.462 |
| ssb | Neisseria gonorrhoeae MS11 |
46.448 |
99.457 |
0.462 |