Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   OCV52_RS01550 Genome accession   NZ_AP025465
Coordinates   337545..338192 (-) Length   215 a.a.
NCBI ID   WP_137407230.1    Uniprot ID   A0A7V7NVN0
Organism   Vibrio chagasii strain LMG 21353     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 332545..343192
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV52_RS01540 uvrA 333534..336365 (-) 2832 WP_137407231.1 excinuclease ABC subunit UvrA -
  OCV52_RS01545 galU 336515..337387 (-) 873 WP_019826989.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  OCV52_RS01550 qstR 337545..338192 (-) 648 WP_137407230.1 LuxR C-terminal-related transcriptional regulator Regulator
  OCV52_RS01555 ssb 338472..339026 (+) 555 WP_137407229.1 single-stranded DNA-binding protein Machinery gene
  OCV52_RS01560 csrD 339188..341203 (+) 2016 WP_137407228.1 RNase E specificity factor CsrD -
  OCV52_RS01565 - 341206..342648 (+) 1443 WP_137407227.1 PilN domain-containing protein -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 25008.20 Da        Isoelectric Point: 9.6671

>NTDB_id=91723 OCV52_RS01550 WP_137407230.1 337545..338192(-) (qstR) [Vibrio chagasii strain LMG 21353]
MRKSRYARTLHFMCIDPSDTYLHVKEIEKHLSIILYKMTPGDLMLVDRKQSNRILLVDYKQVPELLATCPNLTVMWKSHE
IILFNVPQQLPTSELLIFGVLKGLFYNTDKKDKIAHGLQEIINGENWLPRKVTNQLLFYYRNMVNTNTTPTNVDLTIREI
QVIRCLQSGSSNTQIADDLFISEFTVKSHLYQIFRKLAVKNRVQAIAWANQNLLA

Nucleotide


Download         Length: 648 bp        

>NTDB_id=91723 OCV52_RS01550 WP_137407230.1 337545..338192(-) (qstR) [Vibrio chagasii strain LMG 21353]
ATGAGAAAGTCTCGATACGCTCGCACTTTACACTTTATGTGCATCGACCCAAGTGATACTTACTTACACGTAAAAGAAAT
AGAAAAACACCTGTCTATTATCTTGTACAAGATGACGCCAGGCGACTTAATGTTAGTAGACAGAAAGCAGAGTAATCGCA
TTCTTCTTGTCGACTATAAGCAAGTGCCAGAGCTATTAGCAACCTGCCCTAACTTGACCGTGATGTGGAAAAGTCATGAG
ATCATTTTGTTCAATGTCCCCCAGCAACTGCCGACATCAGAGCTTTTGATTTTTGGTGTGTTAAAAGGGCTGTTTTATAA
CACAGATAAAAAAGACAAAATTGCTCATGGTTTACAAGAGATAATCAATGGCGAAAACTGGCTACCAAGAAAGGTTACCA
ATCAATTGCTGTTTTACTACCGTAATATGGTCAATACCAACACAACGCCTACTAATGTTGATCTCACTATTCGCGAGATC
CAGGTCATTCGTTGCCTCCAATCAGGCTCATCGAACACACAAATAGCTGACGACCTATTTATCAGTGAGTTCACCGTGAA
GTCCCACCTCTATCAAATATTCCGCAAACTGGCGGTAAAAAATAGAGTCCAAGCGATCGCATGGGCAAACCAAAATCTGC
TTGCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7V7NVN0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

53.953

100

0.54
  qstR Vibrio parahaemolyticus RIMD 2210633

53.023

100

0.53
  qstR Vibrio cholerae strain A1552

48.598

99.535

0.484

Multiple sequence alignment