Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | OCV19_RS01260 | Genome accession | NZ_AP025463 |
| Coordinates | 280827..281426 (+) | Length | 199 a.a. |
| NCBI ID | WP_065676549.1 | Uniprot ID | A0A1C3JET2 |
| Organism | Vibrio celticus strain CECT 7224 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 275827..286426
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OCV19_RS01240 | - | 275923..276102 (-) | 180 | WP_048659170.1 | hypothetical protein | - |
| OCV19_RS01245 | oxyR | 276101..276994 (+) | 894 | WP_017061132.1 | DNA-binding transcriptional regulator OxyR | - |
| OCV19_RS01250 | - | 277105..279666 (-) | 2562 | WP_065676551.1 | penicillin-binding protein 1A | - |
| OCV19_RS01255 | pilM | 279818..280843 (+) | 1026 | WP_065676550.1 | type IV pilus assembly protein PilM | Machinery gene |
| OCV19_RS01260 | pilN | 280827..281426 (+) | 600 | WP_065676549.1 | PilN domain-containing protein | Machinery gene |
| OCV19_RS01265 | pilO | 281419..282048 (+) | 630 | WP_065676548.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| OCV19_RS01270 | pilP | 282035..282553 (+) | 519 | WP_065676547.1 | pilus assembly protein PilP | Machinery gene |
| OCV19_RS01275 | pilQ | 282589..284307 (+) | 1719 | WP_065676546.1 | type IV pilus secretin PilQ | Machinery gene |
| OCV19_RS01280 | aroK | 284484..285002 (+) | 519 | WP_017061125.1 | shikimate kinase AroK | - |
| OCV19_RS01285 | aroB | 285028..286116 (+) | 1089 | WP_017061124.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 199 a.a. Molecular weight: 23013.47 Da Isoelectric Point: 9.5918
>NTDB_id=91681 OCV19_RS01260 WP_065676549.1 280827..281426(+) (pilN) [Vibrio celticus strain CECT 7224]
MLHQINLLPWRDEIRAQHKKRFIHLVILGVIIALIGQWAVGHYFYDQQAKQQARLNYLNQYIAELDRQIQSLKVAEQEHK
AILTRLDVVESLQLGRNKTTDFMNLMPELIPEGVYVDKIKMNGQEIEMSGISDSTARLATMLDNLERSDSLKGVEMHSIV
HNRKRFNKEFQTFKVSFVFSPTSLESTTANRKGKEAHHG
MLHQINLLPWRDEIRAQHKKRFIHLVILGVIIALIGQWAVGHYFYDQQAKQQARLNYLNQYIAELDRQIQSLKVAEQEHK
AILTRLDVVESLQLGRNKTTDFMNLMPELIPEGVYVDKIKMNGQEIEMSGISDSTARLATMLDNLERSDSLKGVEMHSIV
HNRKRFNKEFQTFKVSFVFSPTSLESTTANRKGKEAHHG
Nucleotide
Download Length: 600 bp
>NTDB_id=91681 OCV19_RS01260 WP_065676549.1 280827..281426(+) (pilN) [Vibrio celticus strain CECT 7224]
ATGTTGCATCAAATTAACCTGCTGCCGTGGCGTGATGAGATTCGTGCTCAGCACAAGAAGCGTTTTATCCATCTGGTCAT
TCTTGGCGTCATCATTGCGCTTATAGGGCAATGGGCGGTTGGTCACTATTTTTACGACCAACAAGCCAAGCAGCAAGCTC
GCCTCAATTACCTCAATCAGTACATTGCTGAGCTCGACCGACAAATTCAATCGTTAAAAGTCGCAGAGCAAGAACACAAA
GCCATTCTGACTCGACTTGATGTGGTTGAGTCGCTGCAGCTTGGCCGCAATAAGACCACCGACTTTATGAACTTGATGCC
GGAGCTGATTCCAGAGGGTGTGTATGTCGACAAGATAAAGATGAATGGTCAAGAGATTGAAATGTCGGGCATCAGCGACA
GTACTGCTCGTCTCGCCACCATGTTGGACAACCTCGAACGTTCAGATTCTCTGAAAGGGGTCGAGATGCACTCTATCGTT
CATAACCGCAAGCGCTTCAATAAAGAGTTTCAGACCTTCAAGGTCTCTTTTGTGTTCAGTCCCACCTCTTTAGAAAGCAC
CACTGCGAACCGTAAAGGGAAGGAGGCGCATCATGGCTAA
ATGTTGCATCAAATTAACCTGCTGCCGTGGCGTGATGAGATTCGTGCTCAGCACAAGAAGCGTTTTATCCATCTGGTCAT
TCTTGGCGTCATCATTGCGCTTATAGGGCAATGGGCGGTTGGTCACTATTTTTACGACCAACAAGCCAAGCAGCAAGCTC
GCCTCAATTACCTCAATCAGTACATTGCTGAGCTCGACCGACAAATTCAATCGTTAAAAGTCGCAGAGCAAGAACACAAA
GCCATTCTGACTCGACTTGATGTGGTTGAGTCGCTGCAGCTTGGCCGCAATAAGACCACCGACTTTATGAACTTGATGCC
GGAGCTGATTCCAGAGGGTGTGTATGTCGACAAGATAAAGATGAATGGTCAAGAGATTGAAATGTCGGGCATCAGCGACA
GTACTGCTCGTCTCGCCACCATGTTGGACAACCTCGAACGTTCAGATTCTCTGAAAGGGGTCGAGATGCACTCTATCGTT
CATAACCGCAAGCGCTTCAATAAAGAGTTTCAGACCTTCAAGGTCTCTTTTGTGTTCAGTCCCACCTCTTTAGAAAGCAC
CACTGCGAACCGTAAAGGGAAGGAGGCGCATCATGGCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Vibrio cholerae strain A1552 |
62.5 |
100 |
0.628 |
| pilN | Vibrio campbellii strain DS40M4 |
63.441 |
93.467 |
0.593 |