Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   OCV19_RS01275 Genome accession   NZ_AP025463
Coordinates   282589..284307 (+) Length   572 a.a.
NCBI ID   WP_065676546.1    Uniprot ID   A0A1C3JEJ5
Organism   Vibrio celticus strain CECT 7224     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 277589..289307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV19_RS01255 pilM 279818..280843 (+) 1026 WP_065676550.1 type IV pilus assembly protein PilM Machinery gene
  OCV19_RS01260 pilN 280827..281426 (+) 600 WP_065676549.1 PilN domain-containing protein Machinery gene
  OCV19_RS01265 pilO 281419..282048 (+) 630 WP_065676548.1 type 4a pilus biogenesis protein PilO Machinery gene
  OCV19_RS01270 pilP 282035..282553 (+) 519 WP_065676547.1 pilus assembly protein PilP Machinery gene
  OCV19_RS01275 pilQ 282589..284307 (+) 1719 WP_065676546.1 type IV pilus secretin PilQ Machinery gene
  OCV19_RS01280 aroK 284484..285002 (+) 519 WP_017061125.1 shikimate kinase AroK -
  OCV19_RS01285 aroB 285028..286116 (+) 1089 WP_017061124.1 3-dehydroquinate synthase -
  OCV19_RS01290 - 286196..287713 (+) 1518 WP_065676545.1 SPOR domain-containing protein -
  OCV19_RS01295 - 287783..288631 (+) 849 WP_048605377.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -

Sequence

Protein


Download         Length: 572 a.a.        Molecular weight: 62003.73 Da        Isoelectric Point: 4.3871

>NTDB_id=91684 OCV19_RS01275 WP_065676546.1 282589..284307(+) (pilQ) [Vibrio celticus strain CECT 7224]
MIKGISGLVSKALQGFAVSVMLVVSVLSHAESLPNKLENIDFRVNKDKDAVIIIELATSTAVVDVQRAQEGLSIELINTQ
VDDDKLYLLDVKDFATLVEGIEVYKETPSTRLLATISNDYQYEYNLKGRFIEVVISKPVIDEAAKEKSVLEKEGKLISIN
FQDIPVRNVLQLIADYNDFNLVVSDSVAGNLTLRLDGVPWQQVLDIILQVKGLDKRVDGNVILVAPKAELDLREQQALEK
SRLEEELGELKSEIIKINFAKATDIADMIGGEGAVSMLSDRGSITIDERTNSLLIRELEENIAVIRGIIESLDIPVKQVQ
IEARIVTVTEGNLDELGVRWGVSSTNGSFTVGGSIEGNHPSAITPYDDDSGSSVIDDYLNVNLGATSPNASSIAFQVAKL
GSDTLLDLELSALQQESKAEIISSPRLITTNKKPAYIEQGTEIPYLESSSSGATSVAFKKAVLSLKVTPQITPDNRLVLD
LSVTQDRPGQVVKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHSVSSTVDKVPLLGDLPVLGALFRRSYENVGKSE
LLIFVTPKVVIQ

Nucleotide


Download         Length: 1719 bp        

>NTDB_id=91684 OCV19_RS01275 WP_065676546.1 282589..284307(+) (pilQ) [Vibrio celticus strain CECT 7224]
ATGATTAAAGGAATAAGTGGATTAGTGAGCAAGGCTCTACAAGGTTTTGCTGTGTCTGTGATGTTGGTTGTTAGCGTGCT
CAGCCATGCCGAGAGCTTACCGAACAAATTGGAGAATATTGATTTTAGGGTCAACAAAGATAAAGACGCCGTCATCATTA
TTGAGCTGGCGACCAGCACTGCTGTGGTGGATGTTCAACGTGCTCAGGAAGGGTTAAGTATCGAGTTAATCAATACTCAG
GTTGATGATGACAAGCTTTACCTACTAGATGTAAAAGACTTCGCTACCTTGGTTGAAGGCATTGAAGTCTATAAAGAGAC
ACCAAGCACTCGGCTTCTAGCGACGATTAGCAATGACTATCAGTATGAATACAATCTAAAGGGACGTTTTATTGAGGTGG
TGATCAGCAAACCGGTTATCGATGAAGCGGCCAAAGAAAAAAGCGTTCTAGAGAAAGAGGGCAAGCTGATATCGATTAAC
TTCCAGGATATCCCAGTACGAAATGTCCTGCAGTTGATTGCCGACTACAATGATTTCAATCTCGTCGTGTCTGATTCGGT
AGCCGGAAACCTGACGTTACGCTTAGATGGCGTACCTTGGCAACAAGTTCTCGACATTATCTTGCAAGTTAAAGGCTTGG
ATAAACGTGTTGATGGTAATGTTATCTTGGTCGCGCCGAAAGCGGAGCTCGACCTTCGAGAGCAACAAGCGTTAGAGAAA
TCGCGCTTAGAAGAGGAACTAGGGGAGCTTAAATCGGAAATCATCAAGATTAACTTTGCTAAGGCCACCGACATTGCTGA
CATGATTGGCGGTGAAGGTGCGGTCAGCATGTTGTCCGATCGCGGCTCAATTACCATTGATGAGAGAACCAACTCACTGC
TCATTCGTGAATTGGAAGAAAACATTGCCGTGATCCGAGGCATTATTGAATCGTTAGACATTCCCGTGAAGCAGGTACAG
ATAGAGGCACGTATTGTCACTGTTACCGAGGGTAACCTAGATGAGCTTGGCGTGCGCTGGGGCGTTTCCTCAACCAACGG
AAGCTTCACTGTTGGCGGCTCAATCGAAGGCAACCACCCATCAGCGATTACGCCGTATGACGACGATAGCGGCAGCAGCG
TGATTGATGACTACCTCAATGTTAATTTAGGGGCAACATCGCCGAACGCCTCGAGTATTGCGTTTCAGGTGGCCAAACTG
GGCTCAGATACCTTACTCGATCTTGAACTGTCGGCACTGCAACAAGAGTCGAAAGCTGAAATCATTTCCAGCCCACGCTT
AATCACCACCAATAAAAAGCCCGCTTATATTGAGCAAGGTACTGAAATTCCTTACTTAGAGTCATCTTCAAGTGGCGCTA
CGTCGGTCGCATTTAAGAAAGCGGTATTGAGTCTTAAGGTGACACCACAGATCACACCCGACAATCGCTTGGTCTTGGAT
TTGAGCGTGACTCAAGATAGGCCAGGGCAAGTGGTAAAAACCGGAACCGGTGAAGCTGTCGCAATTGATACGCAAAGAAT
AGGAACGCAAGTACTTGTTAATAATGGTGAAACTGTCGTGCTTGGCGGTATATTTCAGCACAGCGTGAGCAGTACAGTGG
ATAAAGTTCCTCTGTTGGGAGACCTGCCAGTTTTGGGTGCATTGTTCCGTCGTAGCTATGAAAATGTGGGTAAAAGTGAA
CTACTTATTTTTGTCACACCCAAAGTTGTGATTCAGTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(412-570)

Bacterial type II/III secretion system short domain (Secretin_N)

(253-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C3JEJ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio cholerae strain A1552

77.526

100

0.778
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

77.526

100

0.778
  pilQ Vibrio campbellii strain DS40M4

81.25

95.105

0.773
  pilQ Legionella pneumophila strain Lp02

42.857

95.455

0.409
  pilQ Legionella pneumophila strain ERS1305867

42.857

95.455

0.409
  pilQ Pseudomonas aeruginosa PAK

41.324

97.727

0.404
  comQ Acinetobacter baylyi ADP1

38.957

100

0.392
  pilQ Acinetobacter baumannii D1279779

37.478

100

0.379
  pilQ Acinetobacter baumannii strain A118

37.478

100

0.379

Multiple sequence alignment