Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   U8518_RS20090 Genome accession   NZ_CP141267
Coordinates   4384548..4386062 (-) Length   504 a.a.
NCBI ID   WP_101149669.1    Uniprot ID   -
Organism   Aeromonas hydrophila strain MaAh001     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4379548..4391062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U8518_RS20065 (U8518_20065) - 4380671..4381306 (-) 636 WP_011707867.1 nicotinamidase -
  U8518_RS20070 (U8518_20070) - 4381382..4382032 (+) 651 WP_011707866.1 NUDIX hydrolase -
  U8518_RS20075 (U8518_20075) - 4382132..4382617 (+) 486 WP_101149667.1 DUF523 domain-containing protein -
  U8518_RS20080 (U8518_20080) - 4382563..4383519 (-) 957 WP_171279888.1 acyltransferase -
  U8518_RS20085 (U8518_20085) - 4383513..4384427 (-) 915 WP_060391012.1 acyltransferase -
  U8518_RS20090 (U8518_20090) comM 4384548..4386062 (-) 1515 WP_101149669.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  U8518_RS20095 (U8518_20095) ilvG 4386446..4388092 (+) 1647 WP_101149670.1 acetolactate synthase 2 catalytic subunit -
  U8518_RS20100 (U8518_20100) ilvM 4388089..4388340 (+) 252 WP_005306810.1 acetolactate synthase 2 small subunit -
  U8518_RS20105 (U8518_20105) - 4388353..4389297 (+) 945 WP_101149671.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54694.61 Da        Isoelectric Point: 7.4494

>NTDB_id=916731 U8518_RS20090 WP_101149669.1 4384548..4386062(-) (comM) [Aeromonas hydrophila strain MaAh001]
MSLAVVYSRASLGVAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPDPQTTDALPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG
ESSQQIRERVLGARERMLSRNGKLNNLLDSREIEEICRLSPQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGRQAI
EKEHLIEALGYRAMDRLLSRLRSG

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=916731 U8518_RS20090 WP_101149669.1 4384548..4386062(-) (comM) [Aeromonas hydrophila strain MaAh001]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCTTAGGTGTCGCGGCCCCGCAAGTGACGGTGGAAGTCCATTTATCCAA
CGGGCTGCCCGCCTTCAACATGGTGGGCCTGCCGGAAACCTCGGTGAAGGAGTCGCGGGATCGGGTGCGCAGCGCCCTGC
TCAACGGCAATTTCGAGTTCCCGAGCAAACACATCACGGTCAATCTGGCCCCCGCCGATCTGCCCAAGGAGGGGGGCCGC
TTCGATCTGGCCATCGCCATCGGCATTCTCGCCGCTTCGAAGCAGATACCCGCAAAATACCTGCTCGATCATGAATTTTT
AGGCGAACTGGCCCTGACCGGCGAGATCCGTCCCGTGCTCGGGGTGCTGCCCGCCGTGCTCGCCTGCCGGGATGCGGGTC
GCACTCTGCTGGTACCGCGCGAGAATGGCCCCGAGGCCTCGCTGATCCAGGACGCCGAAGTACGCACCGCCCATCAGCTG
CTGGCCGTCACCGCCTGGCTGGCGGGCCAGTACGAACTGCCGCTGCCGGATCCCCAGACCACGGATGCCCTGCCCGATGT
GCCGGACCTGCAGGATGTGATCGGCCAGTCCCAGGCCAAGCGGGCGCTGGAGATCGCCGCCGCCGGCAGCCACAACCTGC
TGTTCATCGGCCCGCCCGGCACCGGCAAGAGCATGCTGGCCAGCCGCTTGCCTGGCATCTTGCCGCCGCTGAGCGAACAG
GAAGCGCAGCAGACCGCCGCCATCCACTCCATCGGCGGCCTCACCCCGCGGGCCGGTCACTGGCATCACAGGCCCTATCG
CACACCCCACCACAGCGCCTCGGCCGTGGCGCTGGTGGGGGGTGGCAGTCACCCTCGGCCCGGCGAAATATCCCTGGCCC
ACAACGGGGTGCTGTTTCTGGATGAACTGCCCGAGTTCGAGCGCAAGGTGCTCGACTCCCTGCGCGAGCCGCTGGAGACC
GGCCATATCACCATCAGCCGGGCCGCCCGCCAGGTCGATTTCCCCGCCCGCTTCCAGCTGGTCGGCGCCATGAATCCCAG
CCCTTGCGGCCACTATGGCGATGGCCAGACCCGCTCCAGCCCGGATCAGATCCTGCGCTACCTCGGCAAGCTCTCGGGCC
CCTTTCTCGACCGCTTCGACCTGACGGTGGAGGTACCGCTGCTGCCCAAGGGCAGCCTGACCGGCAAGGCGGAGCGGGGA
GAGTCGAGCCAGCAGATCCGCGAACGGGTGCTGGGAGCACGGGAGCGCATGCTGAGCCGCAACGGCAAGCTCAACAACCT
GCTTGATAGCCGTGAAATCGAAGAAATCTGCCGCCTATCGCCGCAGGATGCCGAGTTTCTGGAGAACGCCATCCAGAAGC
TGGGGCTCAGCATCCGGGCCTGGCACCGTATCCTGCGGGTGTCGCGCACCATAGCCGATCTGGCAGGACGACAGGCTATC
GAGAAGGAGCACCTGATCGAGGCGCTCGGTTACCGGGCCATGGACCGGCTGCTGTCGCGGCTGCGCAGCGGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.347

99.603

0.631
  comM Vibrio campbellii strain DS40M4

62.351

99.603

0.621
  comM Haemophilus influenzae Rd KW20

61.858

100

0.621
  comM Glaesserella parasuis strain SC1401

60.355

100

0.607
  comM Legionella pneumophila str. Paris

50.794

100

0.508
  comM Legionella pneumophila strain ERS1305867

50.794

100

0.508
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.443

100

0.466