Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   OCV30_RS15545 Genome accession   NZ_AP025460
Coordinates   3437781..3439304 (-) Length   507 a.a.
NCBI ID   WP_065678325.1    Uniprot ID   A0A1C3IJF8
Organism   Vibrio atlanticus strain CECT 7223     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3432781..3444304
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV30_RS15520 - 3432813..3433076 (+) 264 WP_009848104.1 YihD family protein -
  OCV30_RS15525 ccoG 3433402..3434820 (+) 1419 WP_017098109.1 cytochrome c oxidase accessory protein CcoG -
  OCV30_RS15530 - 3434895..3435881 (+) 987 WP_065678339.1 serine/threonine protein kinase -
  OCV30_RS15535 - 3435945..3436544 (+) 600 WP_009848108.1 thiol:disulfide interchange protein DsbA/DsbL -
  OCV30_RS15540 - 3436684..3437637 (+) 954 WP_065678326.1 DUF2860 domain-containing protein -
  OCV30_RS15545 comM 3437781..3439304 (-) 1524 WP_065678325.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  OCV30_RS15550 ilvG 3439776..3441422 (+) 1647 WP_065678324.1 acetolactate synthase 2 catalytic subunit -
  OCV30_RS15555 ilvM 3441424..3441708 (+) 285 WP_009848112.1 acetolactate synthase 2 small subunit -
  OCV30_RS15560 - 3441721..3442689 (+) 969 WP_065678323.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55574.66 Da        Isoelectric Point: 7.6532

>NTDB_id=91669 OCV30_RS15545 WP_065678325.1 3437781..3439304(-) (comM) [Vibrio atlanticus strain CECT 7223]
MGLAIIHSRASVGVEAPEVTVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIINSRFEFPSKRITVNLAPADLPKEGGR
FDLPIALGILVASDQLPTSKIAQHEFIGELALSGELRSVKGVLPATLAADSVERCLVVPHHNGDQAALVGKGAHKSAQTL
LEVCADVCGQAQLGLYRTEHHHVDVSDNRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLRDLLPEMSD
DEAMETASVASLTQQEINQYNWKQRPFRSPHHSSSMAALVGGGSIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIIISRVAGKTRFPARFQLVGALNPSPTGYYEGNQARANPQIILRYLNRLSGPLLDRFDMSLEIPLLPKGMLAEGGDR
GETTQVVKQRVKQARQLMLSRNHKSNALLGSREIEKYCPLRREDAEFLETALHRLGLSIRAYHRIIKVARTIADLEGNEQ
IEKKHLSEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=91669 OCV30_RS15545 WP_065678325.1 3437781..3439304(-) (comM) [Vibrio atlanticus strain CECT 7223]
ATGGGACTCGCAATAATTCATAGCCGAGCTAGTGTGGGTGTAGAGGCACCAGAAGTGACTGTGGAAGTGCATATTAGCAA
CGGAATGCCCGGTTTTACGCTGGTGGGTCTACCTGAAACGACGGTCAAGGAATCTAAAGATCGAGTAAGGAGTGCCATCA
TCAATTCTCGCTTTGAATTTCCATCAAAAAGGATCACGGTTAACCTCGCGCCTGCTGATTTACCCAAGGAGGGAGGCCGT
TTTGATCTGCCAATCGCGCTTGGAATCTTGGTGGCATCAGATCAGCTTCCGACATCAAAAATAGCTCAACATGAATTTAT
CGGTGAGTTGGCATTGTCAGGAGAGTTGCGCTCGGTAAAGGGCGTTCTGCCTGCGACGTTAGCCGCCGATAGTGTCGAGC
GATGCTTAGTGGTTCCACATCACAATGGTGATCAGGCAGCCTTAGTCGGCAAGGGGGCCCATAAATCAGCGCAAACCTTG
CTAGAGGTTTGTGCGGATGTGTGTGGCCAGGCTCAGCTTGGTTTATATCGAACCGAGCATCATCATGTCGATGTATCTGA
TAATCGTGACTTACAAGATATTATTGGTCAGCAGCAAGGTAAGCGAGCACTGGAGATCGCCGCAGCGGGCAACCATAACC
TGCTTTTTCTCGGCCCGCCCGGAACTGGAAAAACCATGTTGGCTTCTCGATTGCGCGATTTGTTACCCGAAATGAGTGAT
GACGAGGCGATGGAAACTGCTTCGGTGGCTTCTTTAACGCAACAAGAGATTAATCAATACAACTGGAAACAACGACCTTT
CCGTTCCCCACACCATTCGAGTTCGATGGCAGCATTGGTCGGTGGTGGCTCGATACCTCGCCCCGGTGAGATATCTTTGG
CGCATAATGGCTTATTGTTTCTTGATGAGATGCCAGAGTTTGAGCGTAAGGTGCTTGATTCACTGCGAGAGCCGCTAGAG
TCGGGTGAAATAATTATCTCCCGTGTCGCGGGTAAGACTCGCTTTCCTGCTCGCTTTCAATTAGTCGGTGCACTTAACCC
AAGTCCAACAGGTTATTACGAGGGCAATCAAGCTCGAGCGAACCCGCAAATTATCCTGCGTTACCTCAACCGCTTATCTG
GGCCATTGTTAGATAGATTCGATATGTCATTGGAGATCCCTCTATTGCCCAAAGGGATGTTGGCTGAAGGTGGCGATCGT
GGTGAAACGACTCAAGTGGTAAAGCAAAGAGTCAAACAAGCGCGCCAGTTGATGCTGTCTCGAAACCATAAGTCGAATGC
ACTGTTAGGTAGCCGAGAAATTGAAAAGTATTGCCCATTGCGACGCGAAGATGCGGAGTTTCTCGAGACCGCACTGCATC
GATTAGGTTTATCGATTCGTGCCTATCATCGAATCATCAAGGTAGCGCGAACTATTGCAGACTTAGAGGGTAACGAGCAG
ATTGAAAAGAAGCATTTATCTGAGGCGCTTGGCTATCGAGCGATGGATCGCTTGCTGAAACAACTTACGGCTCAAGCTGT
GTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C3IJF8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

83.629

100

0.836
  comM Vibrio campbellii strain DS40M4

83.432

100

0.834
  comM Haemophilus influenzae Rd KW20

65.286

100

0.653
  comM Glaesserella parasuis strain SC1401

63.086

100

0.637
  comM Legionella pneumophila str. Paris

48.589

97.83

0.475
  comM Legionella pneumophila strain ERS1305867

48.589

97.83

0.475
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.49

99.803

0.424

Multiple sequence alignment