Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   U3649_RS04340 Genome accession   NZ_CP141262
Coordinates   990368..991882 (-) Length   504 a.a.
NCBI ID   WP_407353660.1    Uniprot ID   -
Organism   Luteimonas sp. R10     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 985368..996882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U3649_RS04330 (U3649_04315) - 985650..987746 (-) 2097 WP_407353658.1 S9 family peptidase -
  U3649_RS04335 (U3649_04320) - 988155..990245 (-) 2091 WP_407353659.1 S9 family peptidase -
  U3649_RS04340 (U3649_04325) comM 990368..991882 (-) 1515 WP_407353660.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  U3649_RS04345 (U3649_04330) ubiK 991892..992170 (-) 279 WP_407353661.1 ubiquinone biosynthesis accessory factor UbiK -
  U3649_RS04350 (U3649_04335) - 992357..992695 (+) 339 WP_370564587.1 P-II family nitrogen regulator -
  U3649_RS04355 (U3649_04340) speE 992889..993737 (-) 849 WP_407353662.1 polyamine aminopropyltransferase -
  U3649_RS04360 (U3649_04345) - 993868..995724 (+) 1857 WP_407353663.1 M48 family metalloprotease -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 53244.24 Da        Isoelectric Point: 8.4439

>NTDB_id=916495 U3649_RS04340 WP_407353660.1 990368..991882(-) (comM) [Luteimonas sp. R10]
MGLALVHGRARAGVSAPAVQVEVYLGGGLPSMSIVGLPEPAVREAKDRVRAAIQCAQYEFPQRRITVNLAPADLPKHGGR
FDLPIALGILAASGQIPLDALRDCEFIGELGLTGELRAVDGALPAALAAARTGRRLVVPRANAAEAALACDVDVRHARTL
LEVCALLNGSRELPRAIAPAAIRVPGADMRDVRGQAHARRALEIAAAGGHHLLLVGPPGCGKTLLASRLPGLLPDASEAE
ALELAAIASVSGRGLDPARWRERPFRAPHHTASAAALVGGGAEPRPGEISLAHHGVLFLDELPEWDRRALEVLREPLESG
AVTISRAARQSEFPARFQLVAAMNPCPCGWAGDVSSRCRCSPDAILRYRARISGPLLDRIDLHVDVPRLPPSQLRPDAPE
GEPSAAILARVQAARAVQRDRAGCTNAGLDQAATLATCRLREADQQLLERAIESLRLSARSMHRILRVARTIADLAGSAE
IATPHLTEALGYRSLDRGPTALAA

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=916495 U3649_RS04340 WP_407353660.1 990368..991882(-) (comM) [Luteimonas sp. R10]
ATGGGACTCGCACTCGTGCATGGACGCGCGCGTGCCGGGGTATCGGCGCCGGCGGTGCAGGTCGAGGTGTACCTGGGCGG
TGGCCTGCCGTCGATGTCGATCGTCGGCCTGCCCGAGCCCGCGGTGCGCGAAGCCAAGGACCGCGTGCGTGCCGCCATCC
AGTGCGCACAGTACGAATTCCCGCAACGCCGCATCACCGTCAATCTCGCCCCGGCCGACCTGCCCAAGCACGGCGGCCGT
TTCGACCTGCCGATCGCCCTCGGCATCCTCGCCGCCAGCGGCCAGATCCCGCTGGATGCGCTGCGCGACTGCGAGTTCAT
CGGCGAGCTGGGCCTGACCGGCGAGCTGCGCGCGGTCGACGGTGCGCTGCCCGCGGCGCTGGCCGCGGCCCGGACCGGGC
GCCGGCTGGTGGTGCCGCGGGCCAACGCCGCGGAAGCGGCGCTGGCCTGCGACGTCGACGTCCGCCACGCCCGCACGCTG
CTCGAGGTCTGCGCCCTGCTGAACGGGAGCCGCGAATTGCCGCGGGCGATCGCGCCGGCGGCGATCCGCGTACCCGGGGC
GGACATGCGCGACGTGCGCGGTCAGGCGCACGCGCGCCGCGCGCTGGAGATCGCCGCCGCCGGCGGCCATCACCTGCTGC
TGGTCGGCCCGCCCGGCTGCGGCAAGACGCTGCTGGCCTCGCGCCTGCCGGGCCTGTTGCCGGACGCCTCCGAGGCGGAA
GCGCTGGAATTGGCCGCGATCGCCTCGGTCAGCGGTCGCGGCCTGGACCCGGCGCGCTGGCGCGAACGGCCCTTCCGCGC
ACCGCACCACACCGCCAGCGCCGCCGCACTGGTCGGTGGCGGCGCCGAGCCGCGGCCGGGCGAGATCTCGCTGGCGCACC
ACGGCGTGCTGTTCCTCGACGAGCTGCCGGAGTGGGACCGGCGCGCCCTCGAGGTGCTGCGCGAGCCGCTCGAATCGGGC
GCGGTGACGATCTCGCGCGCCGCACGCCAGAGCGAGTTCCCGGCACGGTTCCAGCTGGTCGCGGCCATGAACCCTTGCCC
GTGCGGCTGGGCCGGCGACGTTTCCAGCCGCTGCCGCTGCAGTCCGGATGCGATCCTGCGCTACCGCGCCCGCATTTCCG
GACCGCTGCTCGACCGCATCGACCTGCATGTCGACGTGCCCCGGCTGCCGCCGTCGCAGCTGCGCCCGGACGCGCCGGAG
GGCGAGCCGAGCGCCGCGATCCTGGCCCGGGTCCAGGCCGCCCGTGCCGTCCAGCGCGACCGGGCCGGCTGCACCAACGC
CGGCCTCGACCAGGCGGCCACCCTGGCCACCTGCCGCCTGCGCGAGGCCGACCAGCAACTGCTCGAGCGCGCGATCGAAT
CGCTGCGGCTGTCGGCGCGCTCGATGCACCGCATCCTGCGCGTCGCACGCACCATCGCCGACCTGGCCGGCAGCGCGGAA
ATCGCAACGCCGCACCTCACCGAAGCGCTGGGTTATCGGAGCCTGGATCGCGGTCCAACTGCGCTGGCGGCCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.941

100

0.552
  comM Vibrio campbellii strain DS40M4

54.91

99.008

0.544
  comM Haemophilus influenzae Rd KW20

53.175

100

0.532
  comM Glaesserella parasuis strain SC1401

52.673

100

0.528
  comM Legionella pneumophila str. Paris

52.113

98.611

0.514
  comM Legionella pneumophila strain ERS1305867

52.113

98.611

0.514
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.576

100

0.448