Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   U5817_RS24045 Genome accession   NZ_CP141259
Coordinates   5134723..5136222 (-) Length   499 a.a.
NCBI ID   WP_407279088.1    Uniprot ID   -
Organism   Aromatoleum evansii strain MAY27     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 5129723..5141222
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U5817_RS24025 (U5817_23960) - 5129883..5130830 (-) 948 WP_407279084.1 peptidase U32 family protein -
  U5817_RS24030 (U5817_23965) - 5130859..5131833 (-) 975 WP_407279085.1 peptidase U32 family protein -
  U5817_RS24035 (U5817_23970) - 5131847..5133280 (-) 1434 WP_407279086.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme -
  U5817_RS24040 (U5817_23975) - 5133454..5134647 (-) 1194 WP_407279087.1 multidrug effflux MFS transporter -
  U5817_RS24045 (U5817_23980) comM 5134723..5136222 (-) 1500 WP_407279088.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  U5817_RS24050 (U5817_23985) - 5136508..5136771 (-) 264 WP_407279089.1 accessory factor UbiK family protein -
  U5817_RS24055 (U5817_23990) - 5137102..5137845 (+) 744 WP_169125216.1 TorF family putative porin -
  U5817_RS24060 (U5817_23995) glnK 5137896..5138234 (+) 339 WP_169125217.1 P-II family nitrogen regulator -
  U5817_RS24065 (U5817_24000) - 5138246..5139709 (+) 1464 WP_407279090.1 ammonium transporter -
  U5817_RS24070 (U5817_24005) - 5139881..5140327 (+) 447 WP_407279091.1 rhodanese-like domain-containing protein -

Sequence

Protein


Download         Length: 499 a.a.        Molecular weight: 52959.63 Da        Isoelectric Point: 9.0221

>NTDB_id=916487 U5817_RS24045 WP_407279088.1 5134723..5136222(-) (comM) [Aromatoleum evansii strain MAY27]
MSLALVRTRALAGMGAPEVTVEVHLANGLPAFNLVGLPDTEVREARERVRAAIATSQFEFPQRRITVNLAPADLPKEGGR
FDLPIALGILVASGQVDAAGLAKHEFVGELSLDGSLRAVRGGLAMALESGRSGRALVLPAANADEAALARGASVLPATSL
LAVCAHLNGHTPLARRLPPPLAEGREDEPDLAEVKGQLQARRALEVAAAGAHSLLMFGPPGTGKSMLARRLPSLLPPLDE
GEAIESASIQSLEGGFDARRWGRRPYRAPHHSASAPALVGGGANPKPGEISLAHHGVLFLDELPEFDRRVLEALREPLET
GTVTVSRARQRAEFPARFQLVAAMNPCPCGHAGDKGGRCRCTPDQVARYRGRLSGPLLDRMDLVIEVPLLDHGEMTAQPA
GEPSATVRERVVQARAVQRERQGGANSHLAPGRVDALCAPDSQGKALLDQAIRRLNLSARGYHRILKVARTIADLAGAER
VGPAHLAEAIQYRRGLDPR

Nucleotide


Download         Length: 1500 bp        

>NTDB_id=916487 U5817_RS24045 WP_407279088.1 5134723..5136222(-) (comM) [Aromatoleum evansii strain MAY27]
ATGTCGCTGGCTCTCGTACGCACCAGGGCGCTCGCGGGCATGGGCGCGCCCGAGGTGACGGTGGAAGTCCATCTCGCCAA
CGGCCTGCCCGCATTCAACCTGGTCGGCCTGCCCGACACCGAAGTCCGCGAGGCGCGCGAACGCGTGCGCGCCGCGATCG
CGACTTCGCAGTTCGAATTCCCGCAACGCCGCATCACCGTCAATCTCGCACCCGCCGACCTGCCCAAGGAGGGCGGGCGC
TTCGACCTGCCGATCGCGCTGGGCATTCTCGTTGCGTCGGGCCAGGTCGATGCGGCGGGGCTCGCGAAGCATGAGTTCGT
CGGTGAGCTATCGCTCGACGGCAGCCTGCGCGCGGTGCGCGGCGGCCTCGCGATGGCGCTGGAGAGTGGCCGCAGCGGCC
GCGCGCTGGTGCTGCCCGCCGCGAACGCAGACGAGGCGGCGCTCGCACGCGGCGCCAGCGTGCTGCCCGCGACGAGCCTG
CTGGCGGTGTGCGCGCATCTCAACGGCCATACGCCGCTCGCGCGCCGGCTGCCGCCACCCCTCGCGGAAGGGCGCGAGGA
CGAACCCGATCTCGCCGAGGTGAAGGGGCAGCTGCAAGCCCGGCGCGCCCTCGAGGTTGCCGCGGCCGGGGCGCATTCGC
TGTTGATGTTCGGCCCGCCCGGCACCGGCAAGTCCATGCTCGCGCGTCGCCTGCCGAGCCTGTTGCCGCCGCTCGACGAG
GGGGAGGCGATCGAGAGTGCGTCGATCCAGTCGCTGGAAGGCGGTTTCGATGCCCGCCGCTGGGGCCGTCGGCCGTACCG
CGCGCCGCACCACTCGGCGTCCGCGCCGGCGCTCGTGGGCGGCGGCGCGAACCCGAAGCCGGGCGAGATCAGCCTCGCCC
ACCATGGCGTGCTGTTCCTCGATGAACTTCCGGAATTCGACCGCCGCGTGCTCGAGGCGCTGCGCGAGCCGCTGGAGACC
GGCACCGTGACGGTGTCGCGCGCACGGCAGCGGGCCGAGTTTCCCGCGCGCTTCCAACTCGTCGCGGCGATGAATCCCTG
CCCCTGCGGCCACGCGGGGGACAAGGGCGGACGCTGCCGCTGCACGCCCGACCAGGTCGCGCGCTACCGCGGACGCCTGT
CGGGGCCGCTGCTCGATCGCATGGACCTCGTCATCGAGGTGCCGCTGCTCGACCATGGGGAGATGACCGCGCAGCCGGCC
GGCGAACCCAGCGCGACCGTGCGCGAGCGCGTCGTGCAGGCCCGGGCGGTGCAACGGGAACGGCAGGGCGGGGCAAATAG
CCACCTCGCGCCGGGGCGCGTCGATGCGCTGTGTGCGCCCGACTCTCAGGGCAAGGCGCTGCTCGATCAGGCGATCCGGC
GGCTGAACCTGTCCGCACGCGGGTATCATCGCATCCTGAAGGTCGCCCGCACGATCGCGGACCTGGCCGGCGCCGAGCGC
GTCGGTCCGGCGCATCTGGCCGAGGCGATCCAGTACCGGCGCGGCCTCGATCCCCGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

53.908

100

0.539
  comM Vibrio campbellii strain DS40M4

53.535

99.198

0.531
  comM Vibrio cholerae strain A1552

52.929

99.198

0.525
  comM Glaesserella parasuis strain SC1401

51.503

100

0.515
  comM Legionella pneumophila str. Paris

49.299

100

0.493
  comM Legionella pneumophila strain ERS1305867

49.299

100

0.493
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.071

100

0.447