Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OCV30_RS01920 Genome accession   NZ_AP025460
Coordinates   380995..381552 (+) Length   185 a.a.
NCBI ID   WP_009847868.1    Uniprot ID   A0A2N7NKE0
Organism   Vibrio atlanticus strain CECT 7223     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 375995..386552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV30_RS01905 uvrA 376061..378892 (-) 2832 WP_065680116.1 excinuclease ABC subunit UvrA -
  OCV30_RS01910 galU 379043..379915 (-) 873 WP_065680117.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  OCV30_RS01915 qstR 380070..380717 (-) 648 WP_029222919.1 LuxR C-terminal-related transcriptional regulator Regulator
  OCV30_RS01920 ssb 380995..381552 (+) 558 WP_009847868.1 single-stranded DNA-binding protein Machinery gene
  OCV30_RS01925 csrD 381714..383729 (+) 2016 WP_065680118.1 RNase E specificity factor CsrD -
  OCV30_RS01930 - 383732..385174 (+) 1443 WP_065680119.1 MSHA biogenesis protein MshI -
  OCV30_RS01935 pilO 385174..385821 (+) 648 WP_065680120.1 type 4a pilus biogenesis protein PilO -
  OCV30_RS01940 - 385814..386146 (+) 333 WP_012603133.1 hypothetical protein -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20430.55 Da        Isoelectric Point: 5.2358

>NTDB_id=91633 OCV30_RS01920 WP_009847868.1 380995..381552(+) (ssb) [Vibrio atlanticus strain CECT 7223]
MASRGVNKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRAQGGAPAQGGMGNNQQQGSWGQPQQPQQQQQQYSAPAQQQPKA
PQQAPQQAQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 558 bp        

>NTDB_id=91633 OCV30_RS01920 WP_009847868.1 380995..381552(+) (ssb) [Vibrio atlanticus strain CECT 7223]
ATGGCTAGCCGTGGAGTTAACAAAGTTATATTAGTGGGTAACCTAGGTAATGACCCTGAAATTCGTTACATGCCAAATGG
CGGTGCAGTAGCGAACATTACCATTGCAACGTCAGAGTCATGGCGTGACAAAGCAACTGGCGAACAGCGCGAAAAAACAG
AATGGCACCGTGTTGCTCTGTTTGGCAAGCTGGCGGAAGTTGCTGGTGAGTACCTACGTAAAGGTTCCCAAGTTTACATT
GAAGGTCAACTTCAAACGCGTAAATGGCAAGATCAAAGCGGTCAAGATCGCTACACAACAGAAGTCGTTGTTCAAGGCTT
CAACGGTGTAATGCAAATGCTTGGCGGTCGTGCTCAAGGCGGTGCTCCTGCCCAAGGTGGTATGGGTAACAACCAACAGC
AAGGTAGTTGGGGGCAACCACAGCAGCCACAACAACAGCAGCAACAATACAGTGCGCCAGCTCAACAGCAGCCGAAAGCA
CCTCAACAAGCTCCTCAGCAGGCTCAACCTCAATATAATGAGCCGCCGATGGATTTTGATGATGACATCCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N7NKE0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

82.258

100

0.827
  ssb Glaesserella parasuis strain SC1401

57.447

100

0.584
  ssb Neisseria meningitidis MC58

47.568

100

0.476
  ssb Neisseria gonorrhoeae MS11

47.568

100

0.476

Multiple sequence alignment