Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   OCV30_RS01915 Genome accession   NZ_AP025460
Coordinates   380070..380717 (-) Length   215 a.a.
NCBI ID   WP_029222919.1    Uniprot ID   A0A4U1V1P1
Organism   Vibrio atlanticus strain CECT 7223     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 375070..385717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV30_RS01905 uvrA 376061..378892 (-) 2832 WP_065680116.1 excinuclease ABC subunit UvrA -
  OCV30_RS01910 galU 379043..379915 (-) 873 WP_065680117.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  OCV30_RS01915 qstR 380070..380717 (-) 648 WP_029222919.1 LuxR C-terminal-related transcriptional regulator Regulator
  OCV30_RS01920 ssb 380995..381552 (+) 558 WP_009847868.1 single-stranded DNA-binding protein Machinery gene
  OCV30_RS01925 csrD 381714..383729 (+) 2016 WP_065680118.1 RNase E specificity factor CsrD -
  OCV30_RS01930 - 383732..385174 (+) 1443 WP_065680119.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 25194.31 Da        Isoelectric Point: 9.2504

>NTDB_id=91632 OCV30_RS01915 WP_029222919.1 380070..380717(-) (qstR) [Vibrio atlanticus strain CECT 7223]
MRKSRYARTLHFLCIDPNDTYLHVKEIEKHLSIILYKMTPDELMLVDRKQSNRILLVDYREVPQLLVICPNLTVMWKNHE
IILFNVPQQLPTSELLTYGVLKGLFYNTEQKDKIARGLQEVIDGDNWLPRKVTNQLLFYYRNMVNTNTTPTNVDLTIREI
QVIRCLQSGSSNTQIADDLFISEFTVKSHLYQIFRKLAVKNRVQAIAWANQNLLA

Nucleotide


Download         Length: 648 bp        

>NTDB_id=91632 OCV30_RS01915 WP_029222919.1 380070..380717(-) (qstR) [Vibrio atlanticus strain CECT 7223]
ATGAGAAAATCAAGATACGCTCGCACTTTACACTTTCTGTGCATCGACCCAAACGATACCTATCTACATGTAAAGGAGAT
AGAAAAGCACTTATCTATTATTCTCTACAAAATGACACCCGACGAATTAATGTTAGTTGATAGAAAGCAGAGTAACCGGA
TCTTGCTCGTCGATTATAGAGAGGTACCACAACTACTGGTTATTTGTCCTAACCTGACTGTTATGTGGAAAAATCACGAA
ATCATTTTATTCAATGTCCCCCAGCAACTTCCAACCTCAGAGCTTCTTACCTATGGGGTACTAAAAGGACTCTTTTACAA
CACTGAACAAAAGGACAAGATTGCTCGTGGTCTTCAAGAAGTGATCGATGGTGACAACTGGCTACCTAGGAAGGTGACTA
ATCAACTTCTGTTTTATTATCGTAACATGGTCAATACCAATACGACCCCAACCAATGTTGATTTAACTATTCGTGAAATC
CAAGTCATTCGCTGCCTTCAATCAGGATCATCAAATACTCAAATAGCCGATGACCTTTTCATTAGCGAATTCACGGTCAA
ATCCCACCTCTATCAAATATTCCGTAAGTTAGCGGTGAAAAATAGAGTCCAAGCTATTGCATGGGCAAACCAAAACTTGC
TTGCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4U1V1P1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

53.023

100

0.53
  qstR Vibrio parahaemolyticus RIMD 2210633

52.558

100

0.526
  qstR Vibrio cholerae strain A1552

48.598

99.535

0.484

Multiple sequence alignment