Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   ABXV02_RS08060 Genome accession   NZ_CP159912
Coordinates   1544003..1545007 (+) Length   334 a.a.
NCBI ID   WP_003229718.1    Uniprot ID   O32055
Organism   Bacillus subtilis strain PY79     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1539003..1550007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXV02_RS08030 - 1539232..1539354 (+) 123 WP_003229707.1 hypothetical protein -
  ABXV02_RS08035 yrzF 1539400..1540047 (-) 648 WP_003246159.1 phosphotransferase -
  ABXV02_RS08040 iolG 1540285..1541310 (+) 1026 WP_004398990.1 inositol 2-dehydrogenase -
  ABXV02_RS08045 csbX 1541381..1542688 (+) 1308 WP_003246197.1 MFS transporter -
  ABXV02_RS08050 bofC 1542736..1543248 (+) 513 WP_003229715.1 sporulation cell-cell signaling protein BofC -
  ABXV02_RS08055 ruvA 1543387..1543992 (+) 606 WP_003229717.1 Holliday junction branch migration protein RuvA Machinery gene
  ABXV02_RS08060 ruvB 1544003..1545007 (+) 1005 WP_003229718.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  ABXV02_RS08065 yrzS 1545000..1545200 (+) 201 WP_003222669.1 DUF2905 domain-containing protein -
  ABXV02_RS08070 queA 1545230..1546258 (+) 1029 WP_003229723.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  ABXV02_RS08075 tgt 1546285..1547430 (+) 1146 WP_003229725.1 tRNA guanosine(34) transglycosylase Tgt -
  ABXV02_RS08080 yajC 1547467..1547733 (+) 267 WP_004398708.1 preprotein translocase subunit YajC -
  ABXV02_RS08085 - 1547790..1548179 (-) 390 WP_004398667.1 TIGR04086 family membrane protein -
  ABXV02_RS08090 yrbG 1548377..1549033 (+) 657 WP_004398801.1 DUF421 domain-containing protein -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 37467.78 Da        Isoelectric Point: 5.1631

>NTDB_id=915959 ABXV02_RS08060 WP_003229718.1 1544003..1545007(+) (ruvB) [Bacillus subtilis strain PY79]
MDERLVSSEADNHESVIEQSLRPQNLAQYIGQHKVKENLRVFIDAAKMRQETLDHVLLYGPPGLGKTTLASIVANEMGVE
LRTTSGPAIERPGDLAAILTALEPGDVLFIDEIHRLHRSIEEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATT
RVGLLTAPLRDRFGVMSRLEYYTQEELADIVTRTADVFEVEIDKPSALEIARRSRGTPRVANRLLRRVRDFAQVLGDSRI
TEDISQNALERLQVDRLGLDHIDHKLLMGMIEKFNGGPVGLDTISATIGEESHTIEDVYEPYLLQIGFIQRTPRGRIVTP
AVYHHFQMEAPRYD

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=915959 ABXV02_RS08060 WP_003229718.1 1544003..1545007(+) (ruvB) [Bacillus subtilis strain PY79]
ATGGATGAACGGCTCGTCTCAAGTGAAGCAGACAACCATGAATCAGTGATAGAGCAAAGCCTGAGGCCGCAAAATCTGGC
ACAGTATATCGGGCAGCATAAGGTAAAAGAAAATTTGCGCGTGTTTATAGATGCGGCGAAAATGAGACAGGAGACGCTGG
ATCATGTTCTTCTGTACGGGCCGCCCGGACTCGGAAAAACAACGCTTGCTTCGATTGTTGCTAATGAAATGGGAGTGGAA
TTGCGGACGACATCAGGGCCTGCGATTGAAAGGCCTGGTGATTTGGCTGCTATATTAACGGCGCTGGAACCGGGAGATGT
ATTATTTATTGATGAAATACATAGGCTGCACAGATCGATCGAAGAGGTGCTTTATCCTGCAATGGAAGACTTTTGCCTGG
ACATTGTGATTGGCAAAGGCCCATCTGCCCGCTCGGTTCGCCTCGACCTTCCGCCTTTTACGCTGGTGGGAGCCACGACG
AGGGTGGGGCTTTTGACGGCTCCTTTAAGAGACAGATTCGGCGTAATGTCTCGCCTTGAGTACTATACACAAGAAGAACT
GGCGGATATTGTCACAAGAACCGCTGATGTATTCGAGGTTGAGATTGATAAACCGTCGGCTCTTGAAATTGCAAGAAGAT
CGAGAGGGACGCCCCGCGTGGCGAACCGCCTGCTGAGAAGGGTGCGCGATTTCGCCCAAGTGCTGGGTGACAGCAGGATT
ACGGAAGACATTTCTCAGAATGCGCTGGAGCGGCTTCAGGTTGACCGCCTCGGTTTGGATCATATTGATCATAAGCTGCT
GATGGGCATGATCGAAAAATTCAACGGCGGCCCAGTAGGCCTTGATACGATTTCAGCTACCATCGGCGAGGAATCGCATA
CGATTGAAGACGTATATGAACCATATCTGCTGCAAATTGGATTTATACAAAGAACGCCGCGTGGAAGGATCGTGACACCG
GCCGTTTATCATCATTTCCAAATGGAGGCTCCCCGATATGACTGA

Domains

Predicted by InterProScan.

RuvB AAA lid domain (AAA_lid_4)

(182-255)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(21-179)

RuvB C-terminal winged helix domain (WHD_RuvB)

(257-326)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB O32055

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ruvB Streptococcus pneumoniae TIGR4

60.429

97.605

0.59
  ruvB Streptococcus pneumoniae R6

60.429

97.605

0.59
  ruvB Streptococcus pneumoniae D39

60.429

97.605

0.59
  ruvB Synechocystis sp. PCC 6803

57.143

98.503

0.563
  ruvB Helicobacter pylori 26695

52.744

98.204

0.518