Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   ABXV02_RS08055 Genome accession   NZ_CP159912
Coordinates   1543387..1543992 (+) Length   201 a.a.
NCBI ID   WP_003229717.1    Uniprot ID   O05392
Organism   Bacillus subtilis strain PY79     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1538387..1548992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXV02_RS08020 - 1538710..1538850 (-) 141 WP_004398683.1 hypothetical protein -
  ABXV02_RS08025 yrzH 1538857..1539147 (-) 291 WP_003246047.1 DUF5412 family protein -
  ABXV02_RS08030 - 1539232..1539354 (+) 123 WP_003229707.1 hypothetical protein -
  ABXV02_RS08035 yrzF 1539400..1540047 (-) 648 WP_003246159.1 phosphotransferase -
  ABXV02_RS08040 iolG 1540285..1541310 (+) 1026 WP_004398990.1 inositol 2-dehydrogenase -
  ABXV02_RS08045 csbX 1541381..1542688 (+) 1308 WP_003246197.1 MFS transporter -
  ABXV02_RS08050 bofC 1542736..1543248 (+) 513 WP_003229715.1 sporulation cell-cell signaling protein BofC -
  ABXV02_RS08055 ruvA 1543387..1543992 (+) 606 WP_003229717.1 Holliday junction branch migration protein RuvA Machinery gene
  ABXV02_RS08060 ruvB 1544003..1545007 (+) 1005 WP_003229718.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  ABXV02_RS08065 yrzS 1545000..1545200 (+) 201 WP_003222669.1 DUF2905 domain-containing protein -
  ABXV02_RS08070 queA 1545230..1546258 (+) 1029 WP_003229723.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  ABXV02_RS08075 tgt 1546285..1547430 (+) 1146 WP_003229725.1 tRNA guanosine(34) transglycosylase Tgt -
  ABXV02_RS08080 yajC 1547467..1547733 (+) 267 WP_004398708.1 preprotein translocase subunit YajC -
  ABXV02_RS08085 - 1547790..1548179 (-) 390 WP_004398667.1 TIGR04086 family membrane protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 22584.08 Da        Isoelectric Point: 5.4072

>NTDB_id=915958 ABXV02_RS08055 WP_003229717.1 1543387..1543992(+) (ruvA) [Bacillus subtilis strain PY79]
MIEFVKGTIDYVSPQYIVIENGGIGYQIFTPNPFIYKERSQETIFTYHHIREDAFSLYGFSTREEKALFTKLLNVTGIGP
KGALAILGSGDPGAVIQAIENEDEAFLVKFPGVGKKTARQIILDLKGKLADVVPEMIENLFNHEERLEKQTAETALEEAL
EALRVLGYAEKEIKKVLPHLKEEIGLTTDQYVKKALQKLLK

Nucleotide


Download         Length: 606 bp        

>NTDB_id=915958 ABXV02_RS08055 WP_003229717.1 1543387..1543992(+) (ruvA) [Bacillus subtilis strain PY79]
GTGATTGAATTTGTTAAAGGGACGATTGATTATGTATCTCCCCAATATATTGTCATAGAGAACGGCGGCATCGGCTATCA
GATTTTCACGCCGAATCCGTTTATATATAAGGAGAGAAGCCAAGAAACGATTTTTACATACCATCATATCAGAGAGGATG
CTTTTTCGCTTTATGGTTTTTCAACAAGAGAGGAGAAGGCGCTCTTTACAAAGCTGTTAAACGTGACCGGAATTGGCCCG
AAAGGAGCACTTGCCATCTTGGGCTCGGGTGATCCCGGAGCGGTCATCCAAGCAATTGAAAATGAAGATGAAGCTTTTTT
GGTCAAGTTTCCTGGAGTAGGAAAGAAAACCGCACGCCAGATTATTCTAGATTTAAAAGGAAAGCTGGCAGATGTTGTGC
CTGAAATGATTGAAAATCTGTTTAATCATGAAGAAAGGCTTGAAAAGCAAACAGCGGAAACGGCTCTTGAAGAAGCACTT
GAAGCCCTCAGGGTTCTCGGATATGCTGAAAAAGAAATCAAAAAGGTGCTTCCTCACCTTAAAGAAGAAATTGGGCTGAC
AACAGACCAATATGTGAAAAAAGCATTACAAAAACTATTAAAGTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(155-199)

RuvA N terminal domain (RuvA_N)

(1-59)

Helix-hairpin-helix domain (HHH_5)

(69-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB O05392

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ruvA Streptococcus pneumoniae TIGR4

39.806

100

0.408
  ruvA Streptococcus pneumoniae R6

39.806

100

0.408
  ruvA Streptococcus pneumoniae D39

39.806

100

0.408