Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OCU36_RS01595 Genome accession   NZ_AP025458
Coordinates   329779..330333 (+) Length   184 a.a.
NCBI ID   WP_261838739.1    Uniprot ID   -
Organism   Vibrio artabrorum strain CECT 7226     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 324779..335333
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU36_RS01580 uvrA 324835..327672 (-) 2838 WP_261838736.1 excinuclease ABC subunit UvrA -
  OCU36_RS01585 galU 327820..328692 (-) 873 WP_261838737.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  OCU36_RS01590 qstR 328853..329500 (-) 648 WP_261838738.1 LuxR C-terminal-related transcriptional regulator Regulator
  OCU36_RS01595 ssb 329779..330333 (+) 555 WP_261838739.1 single-stranded DNA-binding protein Machinery gene
  OCU36_RS01600 csrD 330495..332516 (+) 2022 WP_261838740.1 RNase E specificity factor CsrD -
  OCU36_RS01605 - 332513..333955 (+) 1443 WP_261838741.1 MSHA biogenesis protein MshI -
  OCU36_RS01610 pilO 333955..334602 (+) 648 WP_261838742.1 type 4a pilus biogenesis protein PilO -
  OCU36_RS01615 - 334595..334927 (+) 333 WP_261838743.1 MSHA biogenesis protein MshK -

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 20261.36 Da        Isoelectric Point: 5.2358

>NTDB_id=91590 OCU36_RS01595 WP_261838739.1 329779..330333(+) (ssb) [Vibrio artabrorum strain CECT 7226]
MASRGVNKVILVGNLGNDPEIRYMPNGSAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRAQGGAPAQGGMGNNQQQGGWGQPQQPQQQQYSAPAQQQQKAPQ
QSAPQPAQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 555 bp        

>NTDB_id=91590 OCU36_RS01595 WP_261838739.1 329779..330333(+) (ssb) [Vibrio artabrorum strain CECT 7226]
ATGGCTAGCCGTGGAGTTAACAAAGTTATATTAGTGGGTAACCTAGGTAATGACCCTGAAATTCGTTACATGCCAAATGG
TAGCGCAGTAGCGAACATTACCATTGCAACGTCAGAGTCATGGCGTGATAAAGCGACTGGCGAACAGCGTGAAAAAACAG
AGTGGCACCGTGTTGCTCTGTTTGGAAAACTGGCGGAAGTTGCGGGTGAATACCTACGTAAAGGTTCTCAAGTTTACATT
GAAGGCCAACTTCAAACTCGTAAATGGCAAGATCAAAGCGGTCAAGATCGTTATACAACAGAAGTTGTCGTTCAAGGCTT
CAATGGTGTAATGCAAATGCTGGGTGGCCGCGCTCAAGGTGGTGCTCCTGCTCAAGGTGGTATGGGTAATAACCAACAGC
AGGGTGGTTGGGGGCAGCCACAACAGCCACAACAACAGCAATACAGTGCTCCAGCTCAACAGCAGCAGAAAGCACCTCAA
CAATCAGCACCACAGCCGGCTCAACCTCAATATAATGAACCGCCAATGGATTTTGATGATGACATCCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

80.541

100

0.81
  ssb Glaesserella parasuis strain SC1401

56.842

100

0.587
  ssb Neisseria gonorrhoeae MS11

46.995

99.457

0.467
  ssb Neisseria meningitidis MC58

46.409

98.37

0.457

Multiple sequence alignment