Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   OCU36_RS01590 Genome accession   NZ_AP025458
Coordinates   328853..329500 (-) Length   215 a.a.
NCBI ID   WP_261838738.1    Uniprot ID   -
Organism   Vibrio artabrorum strain CECT 7226     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 323853..334500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU36_RS01580 uvrA 324835..327672 (-) 2838 WP_261838736.1 excinuclease ABC subunit UvrA -
  OCU36_RS01585 galU 327820..328692 (-) 873 WP_261838737.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  OCU36_RS01590 qstR 328853..329500 (-) 648 WP_261838738.1 LuxR C-terminal-related transcriptional regulator Regulator
  OCU36_RS01595 ssb 329779..330333 (+) 555 WP_261838739.1 single-stranded DNA-binding protein Machinery gene
  OCU36_RS01600 csrD 330495..332516 (+) 2022 WP_261838740.1 RNase E specificity factor CsrD -
  OCU36_RS01605 - 332513..333955 (+) 1443 WP_261838741.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24849.96 Da        Isoelectric Point: 9.5178

>NTDB_id=91589 OCU36_RS01590 WP_261838738.1 328853..329500(-) (qstR) [Vibrio artabrorum strain CECT 7226]
MKTSRYARTLHFLCADPSDTHLHIKEIGKHLSIPCYKMTPDELMLVDRKRSNRILLVDYKEVPQLRIDCANLTVMWKNHE
IILFNVPQPLPTSELLTYGVLKGLFYHTEPKDKIALGLQAVIDGQNWLPRKVTNQLLFYYRNMVNTNTTPTNVDLTIREI
QVIRCLQSGASNTQIADDLFISEFTVKSHLYQIFRKLAVKNRVQAIAWANQNLLA

Nucleotide


Download         Length: 648 bp        

>NTDB_id=91589 OCU36_RS01590 WP_261838738.1 328853..329500(-) (qstR) [Vibrio artabrorum strain CECT 7226]
ATGAAAACATCTCGATACGCTCGCACTTTACACTTTCTGTGTGCTGATCCAAGCGACACCCACCTACACATAAAGGAGAT
AGGAAAACACCTATCAATCCCTTGCTACAAAATGACCCCGGATGAATTAATGCTCGTTGATAGGAAAAGGAGTAACCGCA
TCTTACTCGTCGATTACAAAGAGGTACCACAACTCCGTATTGATTGTGCGAACCTGACCGTAATGTGGAAAAACCATGAG
ATCATTTTGTTCAATGTCCCTCAACCACTTCCTACTTCAGAGCTTCTTACCTACGGCGTATTAAAGGGGCTCTTTTACCA
CACCGAGCCAAAAGACAAAATCGCGCTTGGTCTTCAAGCCGTGATAGACGGGCAAAATTGGCTACCAAGAAAGGTAACTA
ATCAACTGTTATTTTATTATCGTAATATGGTCAATACTAATACCACACCGACCAATGTCGACTTAACCATTCGAGAAATC
CAGGTGATTCGCTGTCTGCAATCTGGAGCATCAAACACACAAATCGCCGACGACTTATTTATTAGCGAGTTCACCGTCAA
ATCTCATCTTTACCAGATATTTCGTAAGCTGGCGGTTAAAAATAGAGTCCAAGCCATCGCATGGGCAAACCAAAACCTGC
TTGCGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

53.488

100

0.535
  qstR Vibrio parahaemolyticus RIMD 2210633

52.558

100

0.526
  qstR Vibrio cholerae strain A1552

50.935

99.535

0.507

Multiple sequence alignment