Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   SO572_RS25520 Genome accession   NZ_CP141064
Coordinates   5671147..5672637 (+) Length   496 a.a.
NCBI ID   WP_029611800.1    Uniprot ID   A0A7L9GJF7
Organism   Pseudomonas putida strain XMS-1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5666147..5677637
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SO572_RS25500 (SO572_25490) glnK 5667384..5667722 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  SO572_RS25505 (SO572_25495) - 5668241..5668507 (+) 267 WP_003253640.1 accessory factor UbiK family protein -
  SO572_RS25510 (SO572_25500) - 5668508..5668861 (+) 354 WP_012054068.1 gamma-glutamylcyclotransferase family protein -
  SO572_RS25515 (SO572_25505) - 5668815..5670890 (-) 2076 WP_014754817.1 DUF4034 domain-containing protein -
  SO572_RS25520 (SO572_25510) comM 5671147..5672637 (+) 1491 WP_029611800.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  SO572_RS25525 (SO572_25515) - 5672705..5673073 (-) 369 WP_012054073.1 response regulator transcription factor -
  SO572_RS25530 (SO572_25520) - 5673070..5674062 (-) 993 WP_012054074.1 response regulator -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 52980.90 Da        Isoelectric Point: 7.6996

>NTDB_id=915850 SO572_RS25520 WP_029611800.1 5671147..5672637(+) (comM) [Pseudomonas putida strain XMS-1]
MSLALVHSRAQVGVQAPAVSVETHLANGLPHLTLVGLPETTVKESKDRVRSAIVNSGLKYPQRRITQNLAPADLPKDGGR
YDLAIALGILAADGQVPIATLADMECLGELALSGKLRPVQGVLPAALAAREAGRALVVPRENAEEASLAGGLVVYAVGHL
LELVAHLNGQVPLPPYAANGLILQQRPYPDLSEVQGQLAAKRALLLAAAGAHNLLFTGPPGTGKTLLASRLPGLLPPLDE
HEALEVAAIQSVSGKAPLNSWPQRPFRHPHHSASGPALVGGGSRPQPGEITLAHQGVLFLDELPEFERRVLEVLREPLES
GEIVIARARDKVRFPARFQLVAAMNPCPCGYLGDPTGRCRCSTEQIARYRNKLSGPLLDRIDLHLTVARESTTLNNQPCG
ETSADVAVRVAEARELQHRRQGCANAFLDLEGLRHHCGLVAADQVWLEGACERLTLSLRAAHRLLKVARTLADLEGCETI
GRTHLAEALQYRPGSS

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=915850 SO572_RS25520 WP_029611800.1 5671147..5672637(+) (comM) [Pseudomonas putida strain XMS-1]
ATGTCCCTAGCCCTCGTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCCACCTGGCCAA
CGGCCTGCCTCATCTCACCCTGGTCGGCCTGCCGGAAACCACGGTCAAGGAAAGCAAGGACCGGGTGCGCAGCGCCATCG
TCAACTCCGGGCTGAAGTACCCGCAGCGGCGCATTACCCAGAACCTCGCCCCCGCCGACCTGCCCAAGGATGGCGGCCGA
TATGACCTGGCCATCGCCCTGGGCATCCTCGCCGCCGACGGCCAGGTGCCGATTGCCACCCTGGCCGATATGGAATGCCT
GGGCGAGCTGGCGCTGTCGGGGAAATTGCGCCCGGTGCAGGGTGTGCTGCCTGCGGCACTGGCGGCACGCGAAGCAGGCC
GGGCGCTGGTGGTACCACGGGAAAATGCCGAGGAAGCCAGCCTGGCCGGCGGGTTGGTGGTGTATGCGGTGGGCCACCTG
CTGGAGTTGGTCGCCCACCTGAACGGCCAGGTGCCGCTGCCGCCCTACGCAGCCAACGGCCTGATCCTGCAGCAACGCCC
CTACCCGGACCTGAGCGAAGTGCAGGGCCAACTGGCAGCCAAGCGTGCCTTGCTGCTGGCTGCGGCCGGGGCGCACAACC
TGTTGTTCACCGGGCCGCCCGGCACCGGCAAGACCTTGCTCGCCAGCCGCCTGCCCGGGCTGCTGCCACCGCTGGACGAG
CACGAAGCGCTGGAAGTGGCGGCAATCCAGTCGGTCAGCGGGAAAGCGCCGCTGAACAGCTGGCCACAGCGCCCCTTTCG
CCACCCCCATCACTCTGCGTCCGGCCCGGCGCTGGTCGGTGGCGGTAGCCGACCGCAACCAGGTGAAATCACGCTCGCCC
ATCAGGGCGTGTTGTTTCTCGACGAACTTCCGGAGTTTGAGCGGCGCGTACTGGAAGTGCTTCGCGAGCCATTGGAGTCA
GGTGAAATCGTGATTGCCCGTGCCCGCGACAAAGTGCGTTTCCCCGCGCGCTTCCAGCTGGTGGCGGCGATGAACCCCTG
CCCTTGCGGCTACCTGGGCGACCCCACCGGCCGCTGCCGTTGCAGCACCGAGCAGATCGCGCGCTATCGCAACAAGCTGT
CCGGGCCACTGCTGGACCGCATCGACCTGCACCTGACCGTGGCTCGCGAGAGCACTACATTGAACAACCAGCCTTGCGGT
GAAACCAGTGCCGATGTCGCCGTCAGGGTGGCTGAAGCGCGGGAGCTGCAGCACAGGCGACAAGGGTGTGCGAATGCATT
TCTCGACCTTGAAGGTTTGAGGCATCACTGTGGGTTGGTAGCGGCGGACCAAGTCTGGCTGGAAGGGGCCTGCGAGCGGC
TGACCTTGTCGCTACGCGCGGCGCACCGGTTGTTGAAGGTGGCGCGGACGTTGGCGGACCTGGAGGGATGCGAGACGATT
GGCCGGACGCACTTGGCCGAGGCCCTGCAGTACCGGCCGGGGAGCAGTTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7L9GJF7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

56.048

100

0.56
  comM Haemophilus influenzae Rd KW20

55.4

100

0.558
  comM Vibrio cholerae strain A1552

55.556

99.798

0.554
  comM Glaesserella parasuis strain SC1401

54.291

100

0.548
  comM Legionella pneumophila str. Paris

49.194

100

0.492
  comM Legionella pneumophila strain ERS1305867

49.194

100

0.492
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.61

100

0.482