Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   U8638_RS03045 Genome accession   NZ_CP141060
Coordinates   667501..668022 (+) Length   173 a.a.
NCBI ID   WP_322881340.1    Uniprot ID   -
Organism   Pandoraea sputorum strain EFB03792     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 662501..673022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U8638_RS03035 uvrA 662931..665795 (-) 2865 WP_039395612.1 excinuclease ABC subunit UvrA -
  U8638_RS03040 - 666307..667470 (+) 1164 WP_039395615.1 MFS transporter -
  U8638_RS03045 ssb 667501..668022 (+) 522 WP_322881340.1 single-stranded DNA-binding protein Machinery gene
  U8638_RS03050 - 668236..669444 (+) 1209 WP_322881341.1 glycosyltransferase -
  U8638_RS03055 - 669455..670156 (+) 702 WP_322881342.1 polysaccharide deacetylase family protein -
  U8638_RS03060 - 670304..672646 (+) 2343 WP_331692408.1 patatin-like phospholipase family protein -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18002.71 Da        Isoelectric Point: 5.3258

>NTDB_id=915785 U8638_RS03045 WP_322881340.1 667501..668022(+) (ssb) [Pandoraea sputorum strain EFB03792]
MASVNKVILVGNLGADPEVRYMPSGDAVANIRLATTDRYKDKQSGEFKEMTEWHRVSFFGRLAEIVNEYLKKGSSVYIEG
RIRTRKYQAQDGTERYSTEIVADQMQMLGGRSGGGEGGGGGGYSRGGGGDEGGGGGYSRGGGGGGGGGGGARQQAPAKQS
GGGFDDMDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=915785 U8638_RS03045 WP_322881340.1 667501..668022(+) (ssb) [Pandoraea sputorum strain EFB03792]
ATGGCATCAGTCAACAAAGTGATTCTGGTCGGCAATCTGGGTGCCGACCCCGAAGTCCGCTACATGCCGAGCGGCGATGC
GGTTGCGAACATTCGTCTGGCGACGACAGACCGTTACAAGGACAAGCAGTCCGGCGAATTCAAGGAAATGACGGAATGGC
ACCGTGTGTCGTTCTTCGGCCGTCTGGCTGAGATCGTCAACGAGTACCTGAAGAAGGGTTCGTCGGTGTATATCGAAGGC
CGTATCCGTACGCGCAAGTACCAGGCGCAGGACGGCACGGAGCGCTACAGCACGGAAATCGTGGCTGACCAGATGCAGAT
GCTGGGTGGCCGTAGCGGCGGCGGCGAAGGTGGCGGCGGTGGCGGCTACTCGCGCGGTGGTGGTGGTGACGAAGGCGGTG
GCGGCGGTTACTCGCGAGGCGGTGGCGGTGGCGGTGGCGGCGGCGGCGGTGCCCGTCAGCAAGCCCCGGCCAAGCAGTCC
GGCGGCGGCTTCGACGACATGGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.735

100

0.543
  ssb Glaesserella parasuis strain SC1401

49.444

100

0.514
  ssb Neisseria meningitidis MC58

44.633

100

0.457
  ssb Neisseria gonorrhoeae MS11

44.633

100

0.457
  ssbA Bacillus subtilis subsp. subtilis str. 168

38.333

100

0.399