Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   U8638_RS02425 Genome accession   NZ_CP141060
Coordinates   534575..536155 (-) Length   526 a.a.
NCBI ID   WP_322881303.1    Uniprot ID   -
Organism   Pandoraea sputorum strain EFB03792     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 529575..541155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U8638_RS02400 - 530058..531407 (+) 1350 WP_039402096.1 sigma-54-dependent transcriptional regulator -
  U8638_RS02405 - 531469..532131 (-) 663 WP_224786738.1 carbonic anhydrase -
  U8638_RS02410 - 532527..533051 (-) 525 WP_039395336.1 TlpA disulfide reductase family protein -
  U8638_RS02415 - 533148..533879 (-) 732 WP_322881301.1 hypothetical protein -
  U8638_RS02420 - 533977..534525 (+) 549 WP_322881302.1 hypothetical protein -
  U8638_RS02425 comM 534575..536155 (-) 1581 WP_322881303.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  U8638_RS02430 - 536587..536835 (-) 249 WP_039395339.1 accessory factor UbiK family protein -
  U8638_RS02435 - 537231..538076 (+) 846 WP_039395342.1 TorF family putative porin -
  U8638_RS02440 - 538090..538428 (+) 339 WP_010804740.1 P-II family nitrogen regulator -
  U8638_RS02445 amt 538454..539989 (+) 1536 WP_039395345.1 ammonium transporter -

Sequence

Protein


Download         Length: 526 a.a.        Molecular weight: 55460.41 Da        Isoelectric Point: 7.9014

>NTDB_id=915783 U8638_RS02425 WP_322881303.1 534575..536155(-) (comM) [Pandoraea sputorum strain EFB03792]
MSLAVVSSRAITGMSARPVTVEVHLANGLPGLSLVGLPDTEVKESRERVRSALQNSRFEFPARRITVNLAPADLPKASGC
FDLPIALGILAASGQLPEAGLRTHEFAGELSLTGELRPIRGGLAMASAMASEPSTRALVLPVGSAQEAALVEEATVYGAR
ALLDVCAHLAAPDVAIPLPRAVVQGSPNDRAADTAGGEIDVARVSAPGATPPGSSIADMIDIKGQEHAKRALEVAAAGGH
HLLLYGPPGTGKSMLATRLVGLLPSLCKSQAVEAATLASLSAQGFDMRHWGRRPFRAPHHTASAAALVGGGSTPRPGEIS
LAHRGVLFLDELPEFQRRVLEVLREPLELGHVTISRAGGHATFPAAFQLVAAMNPCPCGDLGHPSRNCRCTSDAVARYRN
RLSGPLLDRIDLHVEVPALSAETFAAPATGERTEVVAMRVRHAQTRQLKRQGQLNCGLSNRALEAQCPLGPAAQEVLHRA
VTQHHWSARTYHRVLRVARTVADLAECDAIDASHIAEAVQYREAPT

Nucleotide


Download         Length: 1581 bp        

>NTDB_id=915783 U8638_RS02425 WP_322881303.1 534575..536155(-) (comM) [Pandoraea sputorum strain EFB03792]
ATGTCATTGGCAGTGGTGAGCAGCCGCGCGATCACCGGTATGTCGGCACGTCCGGTGACAGTCGAAGTCCATCTGGCGAA
CGGCTTGCCGGGACTGTCGCTGGTGGGGCTGCCCGATACCGAAGTGAAGGAGAGTCGCGAGCGGGTGCGCTCGGCGTTGC
AGAACAGCCGGTTTGAATTCCCTGCACGACGCATCACCGTCAATCTGGCCCCGGCCGATCTGCCGAAGGCGTCGGGCTGT
TTTGATCTACCGATTGCGCTCGGCATTCTGGCGGCGAGCGGTCAGTTACCGGAGGCCGGGCTGCGCACGCATGAGTTCGC
GGGCGAGTTGTCGCTTACCGGCGAGTTGCGCCCTATTCGCGGTGGCCTCGCGATGGCGAGCGCGATGGCATCGGAGCCGT
CGACACGCGCGCTCGTGCTTCCCGTCGGGAGCGCACAAGAAGCTGCGCTGGTGGAGGAAGCCACGGTCTATGGCGCACGC
GCTTTACTCGACGTCTGCGCCCACCTCGCGGCGCCGGATGTCGCGATACCGCTCCCACGTGCCGTGGTGCAGGGTTCGCC
TAACGACAGGGCAGCGGACACAGCGGGGGGCGAAATCGACGTCGCGCGAGTCAGTGCGCCGGGCGCCACGCCCCCGGGCA
GCAGCATCGCGGACATGATCGACATCAAAGGGCAGGAGCACGCCAAACGAGCGCTGGAAGTGGCGGCGGCGGGTGGCCAT
CACCTTTTGCTTTACGGGCCACCCGGTACGGGCAAATCGATGCTGGCGACGCGGCTCGTCGGCCTGTTGCCGTCGCTCTG
CAAATCGCAGGCCGTGGAAGCGGCAACGCTCGCAAGTCTGAGCGCGCAGGGCTTCGATATGCGGCATTGGGGACGCCGGC
CCTTTCGTGCGCCGCATCACACGGCATCGGCGGCGGCCCTTGTGGGGGGCGGGAGCACGCCGCGACCGGGGGAAATCAGT
CTGGCGCATCGCGGCGTGCTGTTCCTCGACGAACTGCCGGAATTTCAGCGTCGTGTCCTGGAAGTGCTGCGTGAACCACT
GGAACTGGGGCATGTCACGATTTCGCGCGCCGGTGGGCATGCGACGTTTCCCGCGGCATTTCAACTGGTGGCGGCAATGA
ACCCGTGTCCCTGCGGTGACCTGGGGCACCCGTCACGCAACTGCCGATGCACGAGTGACGCGGTAGCGCGTTACCGCAAC
CGGCTCTCCGGGCCGTTGCTCGACCGCATCGACCTGCACGTGGAAGTGCCTGCACTCAGCGCGGAAACATTCGCCGCTCC
AGCCACCGGTGAGCGCACTGAAGTCGTGGCCATGCGAGTAAGACATGCGCAGACGCGCCAGCTAAAGCGTCAGGGTCAGT
TGAACTGCGGTCTGTCGAATCGTGCGCTGGAAGCGCAATGTCCACTGGGACCGGCGGCGCAGGAGGTGCTGCACCGTGCG
GTGACGCAACACCATTGGTCGGCCCGCACCTACCACCGGGTGTTGCGCGTGGCACGCACTGTGGCGGACCTCGCAGAATG
CGACGCAATCGATGCGTCTCACATCGCCGAGGCGGTGCAGTATCGAGAAGCGCCGACGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(430-522)

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(218-422)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.052

99.43

0.508
  comM Vibrio campbellii strain DS40M4

48.948

99.43

0.487
  comM Glaesserella parasuis strain SC1401

48.282

99.62

0.481
  comM Haemophilus influenzae Rd KW20

48.19

99.81

0.481
  comM Legionella pneumophila str. Paris

47.238

99.81

0.471
  comM Legionella pneumophila strain ERS1305867

47.238

99.81

0.471
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.81

99.81

0.437