Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   U3H55_RS00600 Genome accession   NZ_CP140792
Coordinates   122188..123702 (-) Length   504 a.a.
NCBI ID   WP_322863144.1    Uniprot ID   -
Organism   Aeromonas allosaccharophila strain M01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 117188..128702
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U3H55_RS00575 - 118395..119030 (-) 636 WP_322863141.1 nicotinamidase -
  U3H55_RS00580 - 119105..119755 (+) 651 WP_111807240.1 NrtR DNA-binding winged helix domain-containing protein -
  U3H55_RS00585 - 119752..120264 (+) 513 WP_322863142.1 DUF523 domain-containing protein -
  U3H55_RS00590 - 120180..121154 (-) 975 WP_322863143.1 acyltransferase -
  U3H55_RS00595 - 121161..122060 (-) 900 WP_139409837.1 acyltransferase -
  U3H55_RS00600 comM 122188..123702 (-) 1515 WP_322863144.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  U3H55_RS00605 ilvG 124087..125733 (+) 1647 WP_322863145.1 acetolactate synthase 2 catalytic subunit -
  U3H55_RS00610 ilvM 125730..126008 (+) 279 WP_005339613.1 acetolactate synthase 2 small subunit -
  U3H55_RS00615 - 126021..126965 (+) 945 WP_322863146.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54582.47 Da        Isoelectric Point: 7.6883

>NTDB_id=915590 U3H55_RS00600 WP_322863144.1 122188..123702(-) (comM) [Aeromonas allosaccharophila strain M01]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLNHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPDPQTTDSLPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG
ESSQQIRDRVLAARERMLSRNGKLNNLLDSREIEDICRLSAQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGQPAI
GKEHLIEALGYRAMDRLLSRLRSS

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=915590 U3H55_RS00600 WP_322863144.1 122188..123702(-) (comM) [Aeromonas allosaccharophila strain M01]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCCTCGGGATCGCGGCTCCGCAAGTTACAGTGGAAGTTCATCTCTCCAA
CGGCCTGCCCGCCTTCAACATGGTCGGCCTGCCGGAAACCTCGGTGAAAGAGTCGCGGGATCGGGTGCGCAGCGCCCTGC
TCAACGGCAATTTCGAGTTCCCGAGCAAGCACATCACCGTCAATCTGGCCCCCGCCGATCTGCCCAAGGAGGGCGGTCGT
TTCGATCTGGCCATCGCCATCGGCATTCTCGCCGCTTCCAAGCAAATACCGGCAAAATACCTGCTCAATCACGAATTTTT
AGGGGAGTTGGCTCTGACTGGCGAGATCCGTCCCGTGCTCGGCGTGCTGCCTGCCGTGCTCGCCTGCCGCGATGCAGGAC
GCACCCTGCTGGTGCCGCGAGAGAACGGCCCGGAAGCCTCGCTCATTCAGGATGCCGAGGTGCGCACCGCCCACCAGTTG
CTGGCCGTCACCGCCTGGCTGGCGGGTCAATACGAGCTGCCACTGCCGGATCCCCAGACCACGGACTCCCTGCCCGATGT
ACCAGATCTGCAGGATGTGATCGGCCAGTCACAAGCCAAGCGGGCGCTGGAGATCGCCGCCGCTGGCAGCCACAACCTGC
TGTTCATCGGCCCACCCGGCACTGGCAAGAGCATGCTGGCCAGCCGCCTGCCCGGCATTCTACCGCCCCTTAGCGAGCAG
GAGGCGCAGCAGACCGCCGCCATCCACTCCATCGGCGGCCTCACTCCTCGCGCCGGTCACTGGCACCACAGACCCTATCG
CACGCCTCACCACAGTGCCTCTGCGGTGGCGCTGGTGGGCGGTGGCAGCCACCCAAGGCCCGGCGAAATTTCGTTGGCCC
ACAACGGGGTGCTGTTTCTCGACGAGCTGCCCGAGTTCGAGCGCAAGGTGCTCGACTCACTGCGCGAGCCACTGGAGACC
GGCCACATCACCATCAGCCGGGCCGCCCGTCAGGTGGATTTTCCCGCCCGCTTCCAGCTGGTGGGCGCCATGAACCCCAG
CCCTTGCGGCCACTATGGCGACGGCCAGACCCGCTCCAGCCCGGATCAGATCCTGCGCTACCTCGGCAAACTTTCCGGTC
CCTTTCTCGACCGCTTCGACCTGACGGTGGAGGTGCCGCTGCTGCCCAAGGGGAGTCTGACCGGCAAGGCGGAGCGGGGG
GAGTCAAGCCAGCAGATCCGCGATCGGGTGCTGGCGGCGCGGGAGCGTATGCTCAGCCGCAACGGCAAGCTCAACAATCT
GTTGGATAGTCGTGAAATCGAAGATATTTGCCGATTATCAGCGCAAGATGCCGAATTTTTGGAGAATGCCATCCAGAAGC
TGGGACTCAGCATCCGGGCCTGGCACCGCATTTTGCGGGTGTCGCGCACCATCGCCGATCTGGCCGGGCAACCCGCCATC
GGCAAGGAGCATCTCATCGAGGCACTCGGTTATCGCGCCATGGATCGTCTGCTGTCGCGGCTGCGCAGCAGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.492

100

0.635
  comM Vibrio campbellii strain DS40M4

62.151

99.603

0.619
  comM Haemophilus influenzae Rd KW20

61.462

100

0.617
  comM Glaesserella parasuis strain SC1401

60.158

100

0.605
  comM Legionella pneumophila str. Paris

51.19

100

0.512
  comM Legionella pneumophila strain ERS1305867

51.19

100

0.512
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.245

100

0.464