Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   U6038_RS01080 Genome accession   NZ_CP140715
Coordinates   221664..223151 (-) Length   495 a.a.
NCBI ID   WP_333654766.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain FAHZZU3110hy     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 216664..228151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U6038_RS01055 (U6038_01055) - 216769..217173 (+) 405 WP_279664888.1 MAPEG family protein -
  U6038_RS01060 (U6038_01060) ppa 217292..217816 (+) 525 WP_004692877.1 inorganic diphosphatase -
  U6038_RS01065 (U6038_01065) - 217918..219246 (-) 1329 WP_078425964.1 OprD family outer membrane porin -
  U6038_RS01070 (U6038_01070) - 219706..220476 (+) 771 WP_333654762.1 TorF family putative porin -
  U6038_RS01075 (U6038_01075) - 220823..221593 (+) 771 WP_333654764.1 TorF family putative porin -
  U6038_RS01080 (U6038_01080) comM 221664..223151 (-) 1488 WP_333654766.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  U6038_RS01085 (U6038_01085) - 223217..223444 (-) 228 WP_058868719.1 accessory factor UbiK family protein -
  U6038_RS01090 (U6038_01090) glnK 223720..224058 (+) 339 WP_004281042.1 P-II family nitrogen regulator -
  U6038_RS01095 (U6038_01095) - 224118..225521 (+) 1404 WP_010325684.1 ammonium transporter -
  U6038_RS01100 (U6038_01100) nrdR 225673..226131 (+) 459 WP_004692852.1 transcriptional regulator NrdR -
  U6038_RS01105 (U6038_01105) ribD 226146..227249 (+) 1104 WP_333654770.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54359.23 Da        Isoelectric Point: 7.7956

>NTDB_id=915103 U6038_RS01080 WP_333654766.1 221664..223151(-) (comM) [Acinetobacter johnsonii strain FAHZZU3110hy]
MSFAKIYTRALLGLHAPSVEVEVHLSQGLPSLTIVGLPEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDSSR
LDLPIALGILIASGQLPEQGTENFEFIGELALDGQLRPISGTLSIAIACQLAGHQLILPEANAQEASQLPNFQVFAAQHL
KQVCEHLSQNHLIQQFQPTALKASQHYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLASILPPLNT
QENLEVASIYSVANHQHPFGQRPFRAPHHTASAVALVGGGSQPKPGEITLAHKGVLFLDELPEFDRKVLEVLRQPIEAKE
IVISRASRQITFPANFQLIAAMNPCPCGYAFNQDNRCQCSAEAIKRYQNRISGPLLDRIDLHIDVPPLHASELQDTQAVE
DSATVRERVIQAYEWQMQRQACLNMALSPKQLEQFAPLDGQAALIFEKAQQRLNLSARGYHRILRVARTIADLAQSEHIQ
TGHLTEALSYRQQNA

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=915103 U6038_RS01080 WP_333654766.1 221664..223151(-) (comM) [Acinetobacter johnsonii strain FAHZZU3110hy]
ATGTCTTTTGCCAAAATTTACACTCGAGCTTTGCTCGGTTTACACGCACCTTCGGTTGAAGTTGAAGTTCATCTGAGCCA
AGGACTACCCTCTTTAACCATTGTGGGGCTTCCTGAAGCAGCCGTTCGGGAAAGCAAAGATCGGGTGCGCTCCGCCATTA
TCAATAGTGGCTTTCAGTTTCCGACCAAACGCCTCACCATTAACCTTGCACCTGCAGATCTGCCCAAAGACAGCTCGCGG
TTGGATTTGCCTATTGCACTGGGTATTTTAATTGCCTCTGGTCAGCTCCCTGAGCAAGGAACTGAAAATTTTGAATTTAT
AGGTGAGTTGGCACTTGATGGGCAACTGCGACCAATTTCAGGTACTTTAAGTATTGCGATTGCCTGCCAGCTAGCTGGAC
ATCAACTGATTTTACCTGAGGCCAATGCGCAAGAAGCCTCTCAACTGCCCAACTTTCAAGTGTTTGCAGCGCAACATTTA
AAACAAGTCTGTGAGCATCTGTCGCAAAACCATCTCATCCAACAGTTTCAACCCACGGCGCTAAAAGCCTCACAGCACTA
CAAATTTGATTTGGCCGATGTTAAAGGTCAACTGCGTCCGAGACGTGCCTTAGAGATTGCGGCGGCAGGTGGTCATTCTT
TACTGTTTAAAGGACCGCCAGGGACAGGGAAAACTCTATTGGCTTCACGTTTAGCCAGTATTCTACCACCCTTGAACACG
CAAGAGAATTTGGAAGTGGCGAGTATTTACTCGGTGGCCAATCATCAACATCCTTTTGGGCAGCGGCCATTTCGTGCACC
GCACCATACGGCTTCTGCGGTTGCCTTAGTCGGTGGCGGGTCACAACCCAAACCCGGTGAAATTACTTTGGCACATAAAG
GCGTGCTGTTTTTAGATGAACTACCAGAGTTTGACCGCAAGGTTTTAGAGGTTTTAAGACAGCCGATAGAAGCCAAAGAG
ATTGTGATTTCGCGTGCTTCACGGCAGATCACCTTTCCAGCCAATTTCCAACTGATTGCCGCAATGAACCCGTGTCCCTG
TGGTTATGCTTTTAATCAAGATAACCGTTGCCAGTGCTCAGCCGAGGCGATTAAACGCTACCAAAACCGCATTTCAGGGC
CTTTGCTGGATCGAATTGATTTACATATTGATGTACCACCCTTGCATGCTTCTGAATTGCAGGACACACAAGCCGTGGAA
GACTCGGCAACTGTACGTGAACGCGTGATTCAAGCTTATGAATGGCAAATGCAACGCCAAGCTTGTCTCAATATGGCTTT
ATCACCCAAACAACTCGAACAATTCGCACCACTCGATGGACAAGCGGCTTTAATCTTTGAAAAAGCACAGCAGCGTTTAA
ATTTGTCTGCTCGGGGTTATCATCGGATTTTAAGAGTGGCCAGAACCATTGCGGATTTGGCCCAGTCAGAGCACATCCAA
ACAGGACATTTGACCGAAGCTCTCTCCTACCGACAGCAAAACGCCTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

51.904

100

0.523
  comM Glaesserella parasuis strain SC1401

51.102

100

0.515
  comM Vibrio campbellii strain DS40M4

51.004

100

0.513
  comM Legionella pneumophila str. Paris

50.803

100

0.511
  comM Legionella pneumophila strain ERS1305867

50.803

100

0.511
  comM Vibrio cholerae strain A1552

50.4

100

0.509
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.941

100

0.469