Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   TQH59_RS15615 Genome accession   NZ_CP140708
Coordinates   3127418..3128002 (-) Length   194 a.a.
NCBI ID   WP_004691666.1    Uniprot ID   A0A7H8SPE4
Organism   Acinetobacter johnsonii strain FAHZZU3567hy     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3122418..3133002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TQH59_RS15580 (TQH59_15580) - 3122618..3124036 (+) 1419 WP_125281830.1 aspartate ammonia-lyase -
  TQH59_RS15585 (TQH59_15585) ssb 3124246..3124851 (-) 606 WP_406935379.1 single-stranded DNA-binding protein Machinery gene
  TQH59_RS15590 (TQH59_15590) - 3125100..3125582 (-) 483 WP_333640648.1 hypothetical protein -
  TQH59_RS15595 (TQH59_15595) - 3125657..3125875 (+) 219 WP_005180668.1 helix-turn-helix domain-containing protein -
  TQH59_RS17655 (TQH59_15600) - 3125921..3126061 (-) 141 Protein_3016 YgjP-like metallopeptidase domain-containing protein -
  TQH59_RS15605 (TQH59_15605) - 3126071..3126214 (-) 144 Protein_3017 IS30 family transposase -
  TQH59_RS15610 (TQH59_15610) - 3126534..3127034 (-) 501 WP_110976010.1 YqhA family protein -
  TQH59_RS15615 (TQH59_15615) ssb 3127418..3128002 (-) 585 WP_004691666.1 single-stranded DNA-binding protein Machinery gene
  TQH59_RS15620 (TQH59_15620) - 3128054..3129418 (-) 1365 WP_004978200.1 MFS transporter -
  TQH59_RS15625 (TQH59_15625) - 3129578..3130657 (-) 1080 WP_058870674.1 DUF475 domain-containing protein -
  TQH59_RS15630 (TQH59_15630) tenA 3130868..3131542 (+) 675 WP_125274285.1 thiaminase II -
  TQH59_RS15635 (TQH59_15635) - 3131704..3132078 (+) 375 WP_125274284.1 hypothetical protein -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 21300.03 Da        Isoelectric Point: 6.4819

>NTDB_id=915098 TQH59_RS15615 WP_004691666.1 3127418..3128002(-) (ssb) [Acinetobacter johnsonii strain FAHZZU3567hy]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSDSWTDKSTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDNNRQQGEQMQGGNDGYAQPRFNNNQGGGYNNNNNQGGYGGNPAAGNSNNQQ
SGYANNNPSGFAPKAAPQSAPAAAPADMDDDLPF

Nucleotide


Download         Length: 585 bp        

>NTDB_id=915098 TQH59_RS15615 WP_004691666.1 3127418..3128002(-) (ssb) [Acinetobacter johnsonii strain FAHZZU3567hy]
ATGCGCGGTGTAAATAAAGTTATTTTAGTGGGCACATTAGGCCGAGATCCAGAGACGAAAACTTTTCCAAACGGTGGTTC
GTTGACACAGTTTTCAATTGCAACGAGCGACTCTTGGACAGATAAAAGCACAGGTGAGCGTAAAGAGCAAACCGAATGGC
ACCGTATTGTGTTACACAACCGTCTAGGTGAAATTGCGCAACAATACCTACGTAAAGGTTCGAAAGTTTATATTGAAGGT
TCACTGCGTACTCGTCAGTGGACAGATCAAAATGGTCAAGAACGCTACACCACAGAAATTCGTGGTGAGCAAATGCAGAT
GCTTGACAACAACCGTCAGCAAGGTGAGCAAATGCAAGGCGGAAATGATGGTTATGCACAACCACGTTTCAACAATAACC
AAGGTGGTGGTTATAACAATAACAACAACCAAGGCGGTTATGGCGGCAATCCTGCAGCGGGTAATAGCAACAACCAACAA
AGTGGTTATGCGAACAATAACCCAAGCGGTTTTGCACCCAAGGCGGCTCCTCAGTCAGCGCCTGCGGCAGCACCAGCAGA
TATGGATGATGATCTTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H8SPE4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.246

100

0.526
  ssb Vibrio cholerae strain A1552

44.724

100

0.459
  ssb Neisseria meningitidis MC58

41.414

100

0.423
  ssb Neisseria gonorrhoeae MS11

41.414

100

0.423