Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   TQH59_RS15585 Genome accession   NZ_CP140708
Coordinates   3124246..3124851 (-) Length   201 a.a.
NCBI ID   WP_406935379.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain FAHZZU3567hy     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3119246..3129851
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TQH59_RS15570 (TQH59_15570) - 3120440..3121372 (+) 933 Protein_3010 IS5 family transposase -
  TQH59_RS15575 (TQH59_15575) - 3121593..3122483 (-) 891 WP_125281831.1 LysR substrate-binding domain-containing protein -
  TQH59_RS15580 (TQH59_15580) - 3122618..3124036 (+) 1419 WP_125281830.1 aspartate ammonia-lyase -
  TQH59_RS15585 (TQH59_15585) ssb 3124246..3124851 (-) 606 WP_406935379.1 single-stranded DNA-binding protein Machinery gene
  TQH59_RS15590 (TQH59_15590) - 3125100..3125582 (-) 483 WP_333640648.1 hypothetical protein -
  TQH59_RS15595 (TQH59_15595) - 3125657..3125875 (+) 219 WP_005180668.1 helix-turn-helix domain-containing protein -
  TQH59_RS17655 (TQH59_15600) - 3125921..3126061 (-) 141 Protein_3016 YgjP-like metallopeptidase domain-containing protein -
  TQH59_RS15605 (TQH59_15605) - 3126071..3126214 (-) 144 Protein_3017 IS30 family transposase -
  TQH59_RS15610 (TQH59_15610) - 3126534..3127034 (-) 501 WP_110976010.1 YqhA family protein -
  TQH59_RS15615 (TQH59_15615) ssb 3127418..3128002 (-) 585 WP_004691666.1 single-stranded DNA-binding protein Machinery gene
  TQH59_RS15620 (TQH59_15620) - 3128054..3129418 (-) 1365 WP_004978200.1 MFS transporter -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 22073.84 Da        Isoelectric Point: 5.7903

>NTDB_id=915097 TQH59_RS15585 WP_406935379.1 3124246..3124851(-) (ssb) [Acinetobacter johnsonii strain FAHZZU3567hy]
MDTATYSKTNMSKVILVGTLGRDPETKTFPNGGSLTQFSIATSDSWTDKSTGERKEQTEWHRIVLHNRLGEIAQQYLRKG
SKVYIEGSLRTRQWTDQNGQERYTTEIRGEQMQMLDNNRQQGEQMQGGNDGYAQPRFNNNQGGGYNNNNNQGGYGGNPAA
GNSNNQQSGYANNNPSGFAPKAAPQSAPAAAPADMDDDLPF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=915097 TQH59_RS15585 WP_406935379.1 3124246..3124851(-) (ssb) [Acinetobacter johnsonii strain FAHZZU3567hy]
ATGGATACTGCAACTTATAGTAAAACTAATATGAGCAAAGTCATATTAGTGGGCACATTAGGCCGAGATCCAGAGACGAA
AACTTTTCCAAACGGTGGTTCGTTGACACAGTTTTCAATTGCAACGAGCGACTCTTGGACAGATAAAAGCACAGGTGAGC
GTAAAGAGCAAACCGAATGGCACCGTATTGTGTTACACAACCGTCTAGGTGAAATTGCGCAACAATACCTACGTAAAGGT
TCGAAAGTTTATATTGAAGGTTCACTGCGTACTCGTCAGTGGACAGATCAAAATGGTCAAGAACGCTACACCACAGAAAT
TCGTGGTGAGCAAATGCAGATGCTTGACAACAACCGTCAGCAAGGTGAGCAAATGCAAGGCGGAAATGATGGTTATGCAC
AACCACGTTTCAACAATAACCAAGGTGGTGGTTATAACAATAACAACAACCAAGGCGGTTATGGCGGCAATCCTGCAGCG
GGTAATAGCAACAACCAACAAAGTGGTTATGCGAACAATAACCCAAGCGGTTTTGCACCCAAGGCGGCTCCTCAGTCAGC
GCCTGCGGCAGCACCAGCAGATATGGATGATGATCTTCCATTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(11-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

49

99.502

0.488
  ssb Vibrio cholerae strain A1552

43.147

98.01

0.423
  ssb Neisseria meningitidis MC58

40.704

99.005

0.403
  ssb Neisseria gonorrhoeae MS11

40.704

99.005

0.403