Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   TQH59_RS01045 Genome accession   NZ_CP140708
Coordinates   212882..214369 (-) Length   495 a.a.
NCBI ID   WP_279671011.1    Uniprot ID   A0AA42MQG9
Organism   Acinetobacter johnsonii strain FAHZZU3567hy     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 207882..219369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TQH59_RS01020 (TQH59_01020) - 208000..208404 (+) 405 WP_125280630.1 MAPEG family protein -
  TQH59_RS01025 (TQH59_01025) ppa 208522..209049 (+) 528 WP_058868713.1 inorganic diphosphatase -
  TQH59_RS01030 (TQH59_01030) - 209152..210465 (-) 1314 WP_333641009.1 OprD family outer membrane porin -
  TQH59_RS01035 (TQH59_01035) - 210925..211695 (+) 771 WP_333641010.1 TorF family putative porin -
  TQH59_RS01040 (TQH59_01040) - 212042..212812 (+) 771 WP_058868716.1 TorF family putative porin -
  TQH59_RS01045 (TQH59_01045) comM 212882..214369 (-) 1488 WP_279671011.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  TQH59_RS01050 (TQH59_01050) - 214435..214662 (-) 228 WP_004692854.1 accessory factor UbiK family protein -
  TQH59_RS01055 (TQH59_01055) glnK 214938..215276 (+) 339 WP_004281042.1 P-II family nitrogen regulator -
  TQH59_RS01060 (TQH59_01060) - 215336..216739 (+) 1404 WP_010325684.1 ammonium transporter -
  TQH59_RS01065 (TQH59_01065) nrdR 216891..217349 (+) 459 WP_004692852.1 transcriptional regulator NrdR -
  TQH59_RS01070 (TQH59_01070) ribD 217364..218467 (+) 1104 WP_125280626.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54405.21 Da        Isoelectric Point: 7.5923

>NTDB_id=915062 TQH59_RS01045 WP_279671011.1 212882..214369(-) (comM) [Acinetobacter johnsonii strain FAHZZU3567hy]
MSFAKIYTRALLGLHAPSVEVEVHLSQGLPSLTIVGLPEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDSSR
LDLPIALGILIASGQLPEQGTENFEFIGELALDGQLRPISGTLSIAIACQQADHQLILPEANAQEASQLPNFQVFAAQHL
KQVCEHLSQNHLIQQFQPTALKASQHYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLASILPPLNT
QENLEVASIYSVANHQHPFGQRPFRAPHHTASAVALVGGGSQPKPGEITLAHKGVLFLDELPEFDRKVLEVLRQPIEAKE
IVISRASRQITFPANFQLIAAMNPCPCGYAFNQDSRCQCSAEAIKRYQNRISGPLLDRIDLHIDVPPLHASELQDTQAVE
DSATVRERVIQAYEWQMQRQACLNMALSPKQLEQFAPLDGQAALIFEKAQQRLNLSARGYHRILRVARTIADLAQSEHIQ
TGHLTEALSYRQQNA

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=915062 TQH59_RS01045 WP_279671011.1 212882..214369(-) (comM) [Acinetobacter johnsonii strain FAHZZU3567hy]
ATGTCTTTTGCCAAAATTTACACTCGAGCTTTGCTCGGTTTACACGCACCTTCGGTTGAAGTTGAAGTTCATCTGAGCCA
AGGACTACCCTCTTTAACCATTGTGGGGCTTCCTGAAGCAGCTGTTCGGGAAAGCAAAGATCGGGTGCGCTCCGCCATTA
TCAATAGTGGCTTTCAGTTTCCGACCAAACGCCTCACCATCAACCTTGCGCCCGCAGATCTGCCCAAAGACAGCTCGCGG
TTGGATTTGCCTATTGCACTGGGTATTTTAATTGCCTCTGGTCAGCTCCCTGAGCAAGGAACTGAAAATTTTGAATTTAT
AGGTGAGTTGGCACTTGATGGGCAACTGCGACCAATTTCAGGTACTTTAAGTATTGCGATTGCCTGCCAGCAAGCTGACC
ATCAACTGATTTTACCTGAGGCCAATGCGCAAGAAGCCTCTCAACTGCCCAACTTTCAAGTATTTGCAGCGCAACATTTA
AAACAAGTCTGTGAGCATCTGTCGCAAAACCATCTCATCCAACAGTTTCAACCCACGGCGCTAAAAGCCTCACAGCACTA
CAAGTTTGATTTGGCCGATGTTAAAGGTCAACTGCGTCCAAGACGCGCCTTAGAGATTGCGGCAGCAGGTGGTCATTCTT
TACTGTTTAAAGGACCGCCAGGGACAGGGAAAACCCTATTGGCTTCACGTTTAGCCAGTATTCTACCGCCCTTGAATACG
CAAGAGAATTTGGAAGTGGCGAGTATTTACTCGGTGGCCAATCATCAACATCCTTTTGGACAGCGGCCATTTCGTGCACC
GCACCATACAGCTTCTGCAGTTGCCCTAGTCGGTGGCGGGTCACAACCCAAACCCGGTGAAATTACTTTGGCACATAAAG
GCGTGCTGTTTTTAGATGAGCTACCAGAGTTTGACCGCAAGGTGTTGGAGGTTTTAAGACAGCCGATTGAAGCCAAAGAG
ATTGTGATTTCGCGTGCTTCACGGCAGATCACCTTTCCAGCCAATTTCCAACTGATTGCCGCAATGAATCCGTGTCCCTG
TGGTTATGCTTTTAATCAAGATAGCCGTTGCCAGTGCTCAGCCGAGGCGATTAAACGCTACCAAAACCGCATTTCAGGGC
CTTTGCTGGATCGGATTGATTTACATATTGATGTACCACCCTTGCATGCGTCTGAATTGCAAGACACACAAGCCGTGGAA
GACTCGGCAACTGTACGTGAGCGCGTGATTCAAGCTTATGAATGGCAAATGCAGCGCCAAGCTTGTCTCAATATGGCTTT
ATCACCCAAACAACTCGAACAATTCGCACCGCTAGATGGACAAGCGGCTTTAATCTTTGAAAAAGCACAACAGCGTTTAA
ATTTGTCTGCTCGGGGTTATCATCGGATTTTAAGAGTGGCCAGAACCATTGCGGATTTGGCCCAGTCAGAGCACATCCAA
ACAGGACATTTGACTGAAGCTCTCTCCTACCGACAGCAAAATGCCTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

51.703

100

0.521
  comM Glaesserella parasuis strain SC1401

50.902

100

0.513
  comM Vibrio cholerae strain A1552

50.8

100

0.513
  comM Vibrio campbellii strain DS40M4

50.803

100

0.511
  comM Legionella pneumophila str. Paris

50.803

100

0.511
  comM Legionella pneumophila strain ERS1305867

50.803

100

0.511
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.743

100

0.467