Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   U4W25_RS24300 Genome accession   NZ_CP140489
Coordinates   4990143..4991663 (+) Length   506 a.a.
NCBI ID   WP_042998771.1    Uniprot ID   -
Organism   Citrobacter amalonaticus strain 2023CK-01304     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4985143..4996663
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U4W25_RS24275 (U4W25_24245) ilvE 4986698..4987627 (-) 930 WP_042998773.1 branched-chain-amino-acid transaminase -
  U4W25_RS24280 (U4W25_24250) ilvM 4987646..4987909 (-) 264 WP_042326055.1 acetolactate synthase 2 small subunit -
  U4W25_RS24285 (U4W25_24255) ilvG 4987906..4989552 (-) 1647 WP_042998772.1 acetolactate synthase 2 catalytic subunit -
  U4W25_RS24290 ilvX 4989555..4989605 (-) 51 WP_369700153.1 peptide IlvX -
  U4W25_RS24295 (U4W25_24260) ilvL 4989692..4989790 (-) 99 WP_001311244.1 ilv operon leader peptide -
  U4W25_RS24300 (U4W25_24265) comM 4990143..4991663 (+) 1521 WP_042998771.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  U4W25_RS24305 (U4W25_24270) maoP 4991690..4992028 (-) 339 WP_042326051.1 macrodomain Ori organization protein MaoP -
  U4W25_RS24310 (U4W25_24275) hdfR 4992147..4992980 (+) 834 WP_042998770.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55044.88 Da        Isoelectric Point: 7.1829

>NTDB_id=914521 U4W25_RS24300 WP_042998771.1 4990143..4991663(+) (comM) [Citrobacter amalonaticus strain 2023CK-01304]
MSLSIVHTRAALGVNAPAITIEVHISNGLPGLTLVGLPETTVKEARDRVRSAIINSGYDFPAKKITINLAPADLPKEGGR
YDLPIAVALLVASEQLTTHKLDQYELVGELALTGALRGVPGAISSATEAIRVGRGIIVAKENEDEVGLIEGEGCLVADHL
QAVCAFLEGKYDLSHPVVNNDTISVSSDDLSDIIGQEQGKRSLEITAAGGHNLLLVGPPGTGKTMLASRLNGLLPALSNE
EALESAAILSLVNSTSVQKLWKQRPFRSPHHSASLTAMVGGGTIPAPGEISLAHNGILFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRNTPEQTLRYLSRLSGPFLDRFDLSLEIPLPPPGILSQPGVKG
ENSFTVKHRVIAARERQHKRQGKLNAHLQNKEIREHCPLADEDAQWLEETLIHLGLSIRAWQRLLKVSRTIADLAQAEHI
SRRHLQEAVSYRAIDRLLAHLQKQLT

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=914521 U4W25_RS24300 WP_042998771.1 4990143..4991663(+) (comM) [Citrobacter amalonaticus strain 2023CK-01304]
ATGTCACTGTCAATTGTTCATACACGCGCTGCGCTGGGTGTCAATGCACCGGCGATTACTATCGAAGTGCATATCAGCAA
CGGTTTACCCGGTTTAACACTGGTGGGGTTACCAGAAACGACCGTCAAAGAGGCGCGCGACCGGGTACGCAGCGCGATCA
TTAATAGCGGATATGACTTTCCCGCAAAGAAAATCACCATCAATCTCGCCCCTGCCGATCTTCCCAAAGAGGGCGGGAGA
TATGATTTACCTATTGCTGTGGCGCTTCTGGTTGCCTCTGAGCAGCTTACAACCCATAAACTCGACCAATATGAGTTAGT
GGGTGAATTAGCGCTTACAGGTGCGTTACGCGGCGTTCCCGGCGCCATATCCAGCGCAACCGAGGCGATACGGGTGGGAA
GGGGCATTATCGTGGCAAAAGAGAACGAAGACGAAGTCGGGCTGATTGAGGGTGAAGGATGTCTGGTTGCCGATCATCTA
CAAGCTGTCTGTGCCTTCCTGGAAGGAAAATATGACCTTAGCCATCCTGTTGTTAACAACGACACTATCAGTGTGTCATC
AGATGATCTCAGCGATATTATTGGTCAGGAGCAAGGGAAGCGCAGCCTTGAGATCACCGCCGCAGGTGGCCACAATCTGC
TATTAGTTGGCCCACCGGGTACGGGGAAAACGATGCTTGCCAGCCGTCTTAATGGCCTATTGCCGGCATTAAGTAACGAA
GAAGCCCTGGAAAGCGCCGCTATCCTCAGTCTGGTTAACTCGACCAGCGTGCAAAAGTTATGGAAACAACGACCTTTTCG
CTCACCACACCACAGCGCATCCCTGACCGCCATGGTTGGTGGCGGAACTATCCCCGCACCAGGCGAAATTTCTTTGGCAC
ACAACGGCATACTGTTTCTTGATGAGCTGCCTGAGTTTGAACGACGCACATTAGATGCTCTACGTGAACCGATAGAGTCT
GGTCAGATCCACCTTTCGCGCACGCGCGCTAAGATCACCTATCCTGCGCGCTTTCAATTGGTAGCGGCAATGAATCCCAG
TCCCACCGGTCATTATCAGGGCAACCATAACCGCAATACGCCTGAACAGACATTACGCTATCTCAGTCGGCTATCGGGCC
CCTTTCTGGACCGCTTTGATCTTTCTCTTGAGATCCCTCTCCCACCGCCAGGCATACTCAGCCAGCCTGGTGTAAAGGGA
GAAAACAGCTTTACGGTTAAACATCGGGTCATTGCTGCGCGGGAACGTCAGCATAAACGCCAGGGAAAATTGAATGCACA
CCTGCAAAACAAGGAGATACGTGAACACTGCCCATTAGCAGATGAAGACGCGCAGTGGCTTGAAGAGACCCTCATCCATC
TTGGATTGTCTATACGCGCCTGGCAGCGGTTATTAAAGGTATCGAGGACTATTGCCGATCTCGCGCAAGCCGAACACATT
TCACGAAGACACTTGCAGGAAGCGGTCAGTTACCGGGCGATAGATCGACTGCTTGCTCACCTGCAGAAACAACTGACATA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

60

99.802

0.599
  comM Haemophilus influenzae Rd KW20

59.684

100

0.597
  comM Glaesserella parasuis strain SC1401

58.546

100

0.589
  comM Vibrio campbellii strain DS40M4

58.218

99.802

0.581
  comM Legionella pneumophila str. Paris

47.082

98.221

0.462
  comM Legionella pneumophila strain ERS1305867

47.082

98.221

0.462
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.141

99.407

0.429