Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   U2S75_RS00845 Genome accession   NZ_CP140420
Coordinates   182435..183565 (-) Length   376 a.a.
NCBI ID   WP_064191937.1    Uniprot ID   A0A9P2LA27
Organism   Acinetobacter baumannii strain 2023CK-00893     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 177435..188565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U2S75_RS00820 (U2S75_00820) - 177610..178374 (-) 765 WP_002058213.1 AraC family transcriptional regulator -
  U2S75_RS00825 (U2S75_00825) - 178396..179610 (-) 1215 WP_002058215.1 MFS transporter -
  U2S75_RS00830 (U2S75_00830) - 179747..180397 (+) 651 WP_001984979.1 TetR/AcrR family transcriptional regulator -
  U2S75_RS00835 (U2S75_00835) - 180503..181423 (+) 921 WP_000084546.1 DMT family transporter -
  U2S75_RS00840 (U2S75_00840) - 181815..182384 (-) 570 WP_000633612.1 L-threonylcarbamoyladenylate synthase -
  U2S75_RS00845 (U2S75_00845) dprA 182435..183565 (-) 1131 WP_064191937.1 DNA-processing protein DprA Machinery gene
  U2S75_RS00850 (U2S75_00850) tsaP 183586..184740 (-) 1155 WP_064191933.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  U2S75_RS00855 (U2S75_00855) def 184863..185393 (+) 531 WP_001196539.1 peptide deformylase -
  U2S75_RS00860 (U2S75_00860) - 185430..185858 (+) 429 WP_064191934.1 DUF2946 family protein -
  U2S75_RS00865 (U2S75_00865) - 185931..188045 (+) 2115 WP_064191935.1 TonB-dependent copper receptor -
  U2S75_RS00870 (U2S75_00870) - 188099..188305 (+) 207 WP_000182542.1 hypothetical protein -

Sequence


Protein


Download         Length: 376 a.a.        Molecular weight: 41860.39 Da        Isoelectric Point: 6.4539

>NTDB_id=914158 U2S75_RS00845 WP_064191937.1 182435..183565(-) (dprA) [Acinetobacter baumannii strain 2023CK-00893]
MLTQLSSHHYHTLKVWYLVQHSLVSFKKIIDYFGNCEKATQPDGLAKWSSLGLHANHLKRVSEFQTPQGQTQFEQLVQQV
CQYTDFILTPDDSGYPTQLLPYTDHPPIIFGKGQAQALLQPQIAIVGSRKPSPHGRQVAYDFAYYLSEKGFFISSGLAYG
IDEAAHQGASAHQRTIAVTGTGLDTTYPAQNKKLAEHILAQNGAIITEFLPGTPPLQQHFPRRNRIVSGLSLGVLVVEAT
LKSGSLITANKAAEQGKTVFAIPGHIYSEFHQGCHQLIREGAILIDHPEQIIEDLALPTQWQSQQQNQTEEANTNTPEIP
EHLIDLYQSLDWVGQNIDQLVVHHNIPVSELTSSLMELELLGLCMQQSGLYLRCRS

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=914158 U2S75_RS00845 WP_064191937.1 182435..183565(-) (dprA) [Acinetobacter baumannii strain 2023CK-00893]
ATGCTCACTCAACTTTCTTCACACCACTACCACACACTTAAAGTGTGGTATTTGGTGCAGCACTCTTTAGTCAGCTTTAA
AAAAATTATTGATTATTTTGGAAATTGTGAAAAAGCCACTCAACCTGATGGTTTAGCAAAGTGGTCCTCTCTAGGGCTAC
ATGCTAATCACTTAAAACGTGTAAGTGAGTTTCAAACGCCCCAAGGTCAGACGCAGTTTGAACAACTTGTACAACAAGTT
TGTCAGTATACGGATTTTATTTTAACGCCGGATGACTCAGGCTATCCCACTCAATTACTTCCTTATACAGATCACCCACC
TATTATTTTTGGGAAAGGTCAAGCGCAAGCTTTATTGCAACCTCAGATTGCGATTGTCGGTAGCCGAAAACCAAGCCCAC
ATGGACGACAGGTCGCTTATGATTTTGCCTATTACTTAAGTGAAAAGGGCTTTTTCATTAGTAGTGGTCTGGCTTATGGC
ATTGATGAAGCCGCTCATCAAGGTGCATCTGCTCATCAACGTACCATTGCAGTGACGGGTACGGGCTTAGACACTACTTA
TCCAGCTCAAAATAAAAAACTTGCAGAACATATTTTGGCTCAAAACGGCGCCATTATTACTGAGTTTTTACCGGGTACAC
CGCCATTACAACAGCATTTTCCACGTAGAAACCGAATTGTCAGCGGTTTGAGTTTAGGCGTTTTGGTGGTAGAAGCGACA
TTAAAAAGCGGCTCACTCATCACGGCCAATAAAGCTGCTGAACAAGGTAAAACCGTATTTGCGATTCCGGGCCATATTTA
TAGCGAGTTTCATCAAGGATGCCATCAACTTATCCGTGAAGGTGCAATTTTAATCGACCATCCTGAACAGATTATTGAGG
ATCTTGCTTTACCCACTCAATGGCAAAGTCAGCAACAAAATCAAACTGAAGAAGCTAATACGAATACTCCAGAAATTCCT
GAGCATTTGATTGACCTTTATCAGTCTTTAGACTGGGTGGGACAAAATATTGACCAACTTGTAGTTCACCATAATATTCC
AGTTTCTGAACTGACCTCTTCACTAATGGAACTAGAACTACTCGGTTTATGTATGCAACAATCAGGGCTGTATTTACGTT
GTCGTTCTTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii D1279779

98.138

100

0.981

  dprA Acinetobacter baumannii strain A118

97.872

100

0.979

  dprA Acinetobacter baylyi ADP1

70.341

100

0.713

  dprA Vibrio cholerae strain A1552

43.202

88.032

0.38