Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   U2S72_RS22610 Genome accession   NZ_CP140402
Coordinates   4660942..4662462 (+) Length   506 a.a.
NCBI ID   WP_000050209.1    Uniprot ID   A0A5I5T0Z3
Organism   Salmonella enterica subsp. enterica serovar Hadar strain PNUSAS295274     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4655942..4667462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U2S72_RS22585 (U2S72_22515) ilvE 4657457..4658386 (-) 930 WP_000208532.1 branched-chain-amino-acid transaminase -
  U2S72_RS22590 (U2S72_22520) ilvM 4658404..4658667 (-) 264 WP_000983260.1 acetolactate synthase 2 small subunit -
  U2S72_RS22595 (U2S72_22525) ilvG 4658664..4660352 (-) 1689 WP_001012568.1 acetolactate synthase 2 catalytic subunit -
  U2S72_RS22600 (U2S72_22530) ilvX 4660355..4660405 (-) 51 WP_192930503.1 peptide IlvX -
  U2S72_RS22605 (U2S72_22535) ilvL 4660492..4660590 (-) 99 WP_001311244.1 ilv operon leader peptide -
  U2S72_RS22610 (U2S72_22540) comM 4660942..4662462 (+) 1521 WP_000050209.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  U2S72_RS22615 (U2S72_22545) maoP 4662487..4662825 (-) 339 WP_000840996.1 macrodomain Ori organization protein MaoP -
  U2S72_RS22620 (U2S72_22550) hdfR 4662932..4663780 (+) 849 WP_001541181.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55012.22 Da        Isoelectric Point: 8.4867

>NTDB_id=914018 U2S72_RS22610 WP_000050209.1 4660942..4662462(+) (comM) [Salmonella enterica subsp. enterica serovar Hadar strain PNUSAS295274]
MSLAIVHTRAALGVNAPPITIEVHISNGLPGLTMVGLPETTVKEARDRVRSAIINSGYEFPAKKITINLAPADLPKEGGR
YDLPIAVALLAASEQLTASNLEAYELVGELALTGALRGVPGAISSATEAIKAGRNIIVATENAAEVGLISKEGCFIADHL
QTVCAFLEGKHALERPLAQDMASPTATADLRDVIGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRLSGILPPLSNE
EALESAAILSLVNADTVQKRWQQRPFRSPHHSASLTAMVGGGAIPAPGEISLAHNGILFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLIAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSQHASKG
ENSATVKKRVIAAHERQYRRQKKLNARLEGREIQKYCVLHHDDARWLEDTLVHLGLSIRAWQRLLKVARTIADIELADQI
SRQHLQEAVSYRAIDRLLIHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=914018 U2S72_RS22610 WP_000050209.1 4660942..4662462(+) (comM) [Salmonella enterica subsp. enterica serovar Hadar strain PNUSAS295274]
ATGTCACTGGCGATTGTTCATACCCGCGCCGCACTTGGCGTCAATGCGCCGCCTATCACTATAGAGGTGCATATCAGTAA
TGGATTACCGGGATTAACCATGGTTGGCCTACCGGAAACCACGGTAAAAGAGGCGCGTGACCGGGTACGTAGTGCGATTA
TTAATAGCGGATATGAATTTCCGGCTAAAAAAATAACCATTAACCTTGCTCCAGCCGATCTACCGAAAGAGGGCGGAAGG
TATGACCTGCCTATTGCTGTTGCGCTTCTGGCCGCGTCTGAGCAGCTTACAGCGTCGAATCTTGAGGCATATGAGCTGGT
GGGTGAGTTAGCGCTTACGGGCGCATTACGCGGCGTTCCTGGCGCAATATCAAGTGCAACGGAAGCCATCAAGGCCGGCA
GAAATATTATCGTCGCAACAGAGAACGCGGCGGAGGTTGGGCTTATCAGCAAAGAAGGTTGTTTTATCGCCGATCATCTA
CAAACCGTCTGCGCCTTTCTGGAAGGGAAACACGCCCTGGAAAGACCTTTAGCTCAGGATATGGCATCGCCTACCGCAAC
TGCCGATCTTCGCGATGTGATCGGTCAGGAGCAGGGTAAACGCGGCCTGGAGATTACAGCGGCAGGGGGACATAATCTGC
TATTGATCGGCCCGCCGGGTACGGGTAAAACCATGCTGGCCAGTCGACTGAGCGGGATTCTTCCACCATTAAGCAATGAA
GAGGCGTTGGAAAGCGCCGCGATCCTCAGTCTGGTTAATGCCGATACGGTACAAAAACGATGGCAGCAACGCCCCTTTCG
CTCACCTCATCATAGCGCCTCACTTACTGCTATGGTCGGCGGCGGCGCAATACCCGCCCCGGGAGAGATATCGCTGGCGC
ACAACGGAATTTTGTTCCTTGATGAATTGCCTGAATTTGAGCGACGCACACTGGATGCGCTACGTGAACCTATAGAATCC
GGTCAAATTCATTTATCCCGTACCAGAGCGAAAATAACGTACCCTGCCAGGTTCCAGTTAATCGCCGCAATGAATCCCAG
CCCGACCGGACATTATCAGGGAAACCATAATCGCTGCACGCCAGAACAGACACTACGTTACCTTAATAGGTTGTCAGGCC
CGTTTCTTGATCGTTTTGACCTTTCGCTTGAGATACCGCTTCCTCCGCCCGGGATTCTTAGCCAACACGCCTCAAAGGGT
GAGAACAGCGCTACGGTAAAAAAGCGGGTCATCGCCGCCCATGAACGGCAGTACCGACGCCAGAAGAAGTTAAACGCGCG
TCTGGAGGGTCGCGAAATCCAAAAATACTGTGTTTTGCATCACGATGACGCCCGCTGGCTTGAAGACACGCTGGTGCATC
TTGGATTATCCATTCGCGCCTGGCAGCGTTTACTAAAAGTGGCCAGAACCATTGCCGACATAGAACTGGCTGACCAGATC
TCGCGTCAGCATTTGCAGGAGGCGGTAAGCTATCGGGCGATAGACAGGTTGTTAATTCATTTGCAAAAGCTGCTGGCGTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I5T0Z3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.513

100

0.591
  comM Glaesserella parasuis strain SC1401

58.35

100

0.587
  comM Vibrio cholerae strain A1552

58.614

99.802

0.585
  comM Vibrio campbellii strain DS40M4

57.54

99.605

0.573
  comM Legionella pneumophila str. Paris

47.887

98.221

0.47
  comM Legionella pneumophila strain ERS1305867

47.887

98.221

0.47
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.801

100

0.429