Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   R5R73_RS17950 Genome accession   NZ_CP140261
Coordinates   3942039..3943550 (-) Length   503 a.a.
NCBI ID   WP_322528233.1    Uniprot ID   -
Organism   Salinicola sp. LHM     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3937039..3948550
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5R73_RS17930 (R5R73_17930) - 3937599..3938705 (+) 1107 WP_322528230.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme -
  R5R73_RS17935 (R5R73_17935) - 3938749..3939810 (-) 1062 WP_322528231.1 HlyD family secretion protein -
  R5R73_RS17940 (R5R73_17940) - 3939816..3941363 (-) 1548 WP_322528232.1 MFS transporter -
  R5R73_RS17945 (R5R73_17945) - 3941526..3941984 (-) 459 WP_071231034.1 MarR family winged helix-turn-helix transcriptional regulator -
  R5R73_RS17950 (R5R73_17950) comM 3942039..3943550 (-) 1512 WP_322528233.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  R5R73_RS17955 (R5R73_17955) - 3943750..3944076 (-) 327 WP_087719658.1 accessory factor UbiK family protein -
  R5R73_RS17960 (R5R73_17960) - 3944370..3944708 (+) 339 WP_071231037.1 P-II family nitrogen regulator -
  R5R73_RS17965 (R5R73_17965) - 3944734..3945984 (+) 1251 WP_322528234.1 ammonium transporter -
  R5R73_RS17970 (R5R73_17970) glnK 3946155..3946493 (+) 339 WP_087719656.1 P-II family nitrogen regulator -
  R5R73_RS17975 (R5R73_17975) - 3946707..3947483 (-) 777 WP_071231039.1 ferredoxin--NADP reductase -

Sequence

Protein


Download         Length: 503 a.a.        Molecular weight: 53995.16 Da        Isoelectric Point: 7.5718

>NTDB_id=913321 R5R73_RS17950 WP_322528233.1 3942039..3943550(-) (comM) [Salinicola sp. LHM]
MTLAIVRARASLGLEAPEVLIEVHLSNGLPGLTLVGLPETAVKESRERVRSALINAGFEFPSRRITLNLAPADLPKDGGR
FDLPIALGILMASGQVPVEAAEKLEVVGELALDGALRPVTGVLPTALAARRAGRGLIVPLANADEAALADGVEVFAAGHI
LEVVGHLLGREKLTPHQFGAPIRARVAQPDMADVKGQHQARRALEVAAAGGHNLLLAGPPGTGKTMLASRLAGILPPLTQ
DESLEVAAVRSVCGLPIMERWGQRPFRNPHHTSSSVALVGGGSRPRPGEISLAHQGVLFLDELPEFDRHVLEVLREPMES
AQILISRANHQRRFPARFQLVAAMNPCPCGHLGDPRQRCHCSPAQIQRYQSRLSGPLLDRIDLQVEVPALPATQLTDQTP
GESSASVMERVLAARERQQARGSLNAHLPGPELEAACALSSDERQWFASVLDRLNLSARAYHRVLRVALTLADLAEESRV
GKAQLMEAIGYRQLDRMLGGDRP

Nucleotide


Download         Length: 1512 bp        

>NTDB_id=913321 R5R73_RS17950 WP_322528233.1 3942039..3943550(-) (comM) [Salinicola sp. LHM]
ATGACCCTTGCCATCGTGCGCGCCCGCGCCAGCCTCGGGCTCGAGGCCCCGGAAGTCCTGATCGAAGTGCATCTCAGTAA
CGGCCTGCCGGGGCTGACGCTGGTCGGGCTGCCGGAGACGGCGGTCAAGGAGAGTCGCGAGCGGGTTCGCAGTGCGCTCA
TCAATGCCGGGTTCGAATTCCCCTCCCGCCGTATCACGCTCAACCTGGCGCCTGCGGACTTGCCCAAGGATGGCGGGCGT
TTCGACCTGCCCATTGCACTTGGCATCCTGATGGCATCGGGCCAGGTCCCTGTCGAAGCGGCCGAGAAACTCGAGGTCGT
CGGCGAACTGGCGCTGGACGGGGCGCTACGTCCCGTTACCGGTGTTCTGCCCACGGCGCTGGCGGCGCGCCGGGCAGGAC
GCGGCCTTATCGTTCCGCTCGCCAATGCCGACGAAGCCGCGCTGGCCGATGGCGTCGAAGTCTTCGCGGCAGGGCACATT
CTCGAGGTGGTGGGTCATTTGTTGGGTCGCGAGAAACTCACCCCGCACCAATTTGGCGCGCCAATTCGCGCTCGCGTGGC
GCAGCCCGACATGGCGGACGTCAAAGGTCAGCATCAGGCGCGCCGAGCGCTGGAAGTCGCGGCAGCGGGTGGGCACAACC
TGCTGCTGGCGGGGCCGCCCGGCACCGGCAAGACCATGCTGGCGAGCCGCCTGGCCGGGATCCTGCCGCCACTGACCCAG
GACGAATCGCTCGAGGTCGCGGCCGTGCGCTCGGTCTGCGGTCTGCCGATCATGGAGCGCTGGGGGCAGCGGCCGTTTCG
CAACCCGCACCACACCTCGAGCAGTGTCGCACTGGTGGGCGGGGGTTCACGGCCGCGGCCCGGCGAAATATCGCTGGCGC
ACCAGGGCGTGTTGTTCCTGGACGAACTGCCGGAGTTCGACCGTCATGTGCTGGAGGTCCTGCGGGAGCCGATGGAATCC
GCCCAGATCCTGATCTCGCGGGCCAATCATCAGCGCCGCTTTCCGGCCCGATTCCAGCTCGTTGCCGCGATGAACCCGTG
CCCCTGCGGCCATCTCGGGGATCCGCGTCAGCGCTGCCACTGCAGCCCGGCGCAGATCCAGCGCTACCAGTCGCGGCTAT
CCGGGCCGCTGCTGGATCGCATCGATCTGCAGGTCGAAGTGCCGGCGCTACCCGCGACGCAGCTCACCGACCAGACGCCC
GGCGAGTCTTCCGCCAGCGTGATGGAGCGGGTGCTTGCCGCCCGCGAGCGCCAGCAGGCGCGAGGATCACTCAATGCCCA
TCTGCCGGGCCCCGAGCTGGAAGCGGCATGCGCGCTATCCTCGGATGAACGTCAGTGGTTCGCCAGCGTGCTGGACCGCC
TCAACCTCTCGGCTCGGGCCTACCATCGCGTGCTGCGCGTGGCGCTGACGCTGGCGGATCTGGCCGAAGAGTCCCGGGTC
GGCAAGGCGCAGCTGATGGAAGCGATTGGTTACCGTCAACTGGATCGAATGCTGGGCGGCGACAGGCCTTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-393)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.777

99.801

0.557
  comM Vibrio campbellii strain DS40M4

54.89

99.602

0.547
  comM Haemophilus influenzae Rd KW20

53.516

100

0.545
  comM Glaesserella parasuis strain SC1401

53.125

100

0.541
  comM Legionella pneumophila str. Paris

50.398

99.801

0.503
  comM Legionella pneumophila strain ERS1305867

50.398

99.801

0.503
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

48.221

100

0.485