Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   SR914_RS05655 Genome accession   NZ_CP140157
Coordinates   1233294..1234832 (-) Length   512 a.a.
NCBI ID   WP_003059641.1    Uniprot ID   B7X040
Organism   Comamonas testosteroni strain DSMZ 14576     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1228294..1239832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SR914_RS05635 (SR914_05635) - 1228642..1229922 (+) 1281 WP_003059629.1 CaiB/BaiF CoA transferase family protein -
  SR914_RS05640 (SR914_05640) - 1229958..1231025 (-) 1068 WP_003059631.1 NAD(P)H-dependent flavin oxidoreductase -
  SR914_RS05645 (SR914_05645) - 1231059..1232240 (-) 1182 WP_003059637.1 YbfB/YjiJ family MFS transporter -
  SR914_RS05650 (SR914_05650) - 1232351..1233280 (+) 930 WP_003059639.1 LysR substrate-binding domain-containing protein -
  SR914_RS05655 (SR914_05655) comM 1233294..1234832 (-) 1539 WP_003059641.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  SR914_RS05660 (SR914_05660) - 1234918..1235466 (-) 549 WP_003059643.1 MarR family winged helix-turn-helix transcriptional regulator -
  SR914_RS05665 (SR914_05665) - 1235559..1236530 (+) 972 WP_003059644.1 tripartite tricarboxylate transporter substrate binding protein -
  SR914_RS05670 (SR914_05670) - 1236660..1237652 (+) 993 WP_003059645.1 Bug family tripartite tricarboxylate transporter substrate binding protein -
  SR914_RS05675 (SR914_05675) - 1237766..1239094 (+) 1329 WP_003059646.1 sulfatase -

Sequence

Protein


Download         Length: 512 a.a.        Molecular weight: 54781.67 Da        Isoelectric Point: 7.8399

>NTDB_id=913136 SR914_RS05655 WP_003059641.1 1233294..1234832(-) (comM) [Comamonas testosteroni strain DSMZ 14576]
MGLALVQSRALLGLQAPGVTVEVHLANGLPSFTLVGLADVEVKEARERVRAAIVNAGLQFPNNQRITVNLAPADLPKDSG
RFDLPIALGILAASGQIDAQRLADYEFAGELSLTGALRPVRGALATALALQRQQRRVRLVLPPDSAQEAAFVPAIEVFSA
AHLLDVVRQFIAHDATLAEQGDGVEGWQRVHSIPAEASLQSLDLREVRGQMQAKRALEIAAAGAHGVLMIGPPGSGKSML
AQRFASLLPGMTDEEALEAAAIASLSGRFTPQLWRQRPFAAPHHTASSIALVGGGSPPRPGEISYAHCGALFLDELPEFA
RSALEALREPLETGRITIARAAQRAEFPARFQLVAAMNPCPCGYWGSRIRACRCSPDQVARYQARISGPLLDRIDLHVEV
AALSPQELLAAPEGESSTAVQQRVSAARDKALQRQGLPNHQLQGVQLDTHLQLEPEALTFAHKAAARLGWSARGTHRALK
VARTIADLAGSDSITQTHLAEALQYRRALMQP

Nucleotide


Download         Length: 1539 bp        

>NTDB_id=913136 SR914_RS05655 WP_003059641.1 1233294..1234832(-) (comM) [Comamonas testosteroni strain DSMZ 14576]
ATGGGTCTGGCTCTGGTTCAAAGTCGTGCCTTGCTGGGCTTGCAGGCACCAGGCGTCACTGTGGAGGTCCATCTGGCCAA
CGGCCTGCCTTCGTTCACCCTGGTGGGCCTGGCGGATGTGGAGGTCAAGGAGGCACGCGAGCGTGTGCGTGCGGCCATCG
TCAATGCGGGGCTGCAGTTCCCGAACAACCAGCGCATCACGGTCAACCTGGCTCCGGCAGACCTGCCCAAGGACTCCGGC
CGCTTTGACCTGCCGATAGCGCTGGGCATTCTGGCGGCCAGCGGGCAGATCGATGCCCAGCGGCTCGCCGACTATGAGTT
TGCGGGTGAGCTGTCCCTGACCGGTGCGCTGCGCCCGGTGCGCGGAGCCCTGGCAACGGCGCTGGCCTTGCAGCGTCAGC
AGCGCCGCGTGCGGCTGGTGCTGCCGCCGGACAGTGCGCAGGAGGCCGCTTTCGTGCCGGCCATCGAAGTCTTCAGCGCC
GCGCATCTGCTGGATGTGGTCAGGCAGTTCATCGCGCATGACGCCACCCTGGCGGAGCAGGGCGACGGCGTGGAGGGCTG
GCAGCGGGTGCACTCCATACCTGCTGAAGCCTCTTTGCAGTCGCTGGATCTGCGCGAGGTGCGTGGCCAGATGCAGGCCA
AGCGCGCGCTTGAAATTGCAGCTGCCGGCGCACATGGTGTGCTCATGATCGGCCCTCCGGGTTCGGGGAAATCCATGCTG
GCCCAGCGCTTTGCCAGCTTGCTGCCGGGCATGACCGATGAGGAAGCGCTCGAAGCCGCAGCCATTGCCAGCCTCAGCGG
TCGTTTCACGCCGCAGCTGTGGCGCCAGCGACCGTTTGCCGCGCCTCATCACACGGCCAGCTCCATTGCGCTGGTCGGCG
GCGGCTCTCCGCCCCGGCCCGGCGAGATATCCTATGCCCATTGCGGGGCGCTTTTCCTGGACGAGCTGCCCGAGTTCGCG
CGCAGCGCCCTGGAGGCCCTGCGCGAGCCGCTGGAGACCGGGCGCATCACCATCGCACGGGCCGCGCAGAGGGCGGAATT
TCCGGCCCGTTTCCAGCTGGTGGCAGCCATGAACCCCTGCCCCTGCGGCTACTGGGGATCGCGCATCAGGGCCTGCCGCT
GCTCGCCCGATCAGGTGGCACGTTATCAGGCGCGCATCAGCGGGCCCTTGCTGGACCGTATCGATCTGCATGTGGAGGTG
GCGGCACTGTCGCCGCAGGAGCTGCTGGCAGCGCCCGAGGGCGAGAGCAGCACTGCCGTGCAGCAACGCGTGAGTGCAGC
CAGAGACAAGGCCTTGCAGCGCCAGGGCCTGCCCAATCATCAGTTGCAGGGGGTGCAGCTCGACACCCATCTGCAGCTGG
AGCCCGAGGCGCTGACCTTTGCGCACAAGGCTGCAGCGCGCCTTGGCTGGTCGGCGCGCGGCACGCACCGGGCCCTGAAG
GTCGCAAGGACCATTGCCGATCTGGCTGGCTCTGATTCCATCACGCAAACCCATCTGGCCGAGGCATTGCAGTACCGCCG
TGCGCTGATGCAGCCTTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(203-407)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(414-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B7X040

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.642

99.805

0.525
  comM Vibrio campbellii strain DS40M4

51.562

100

0.516
  comM Haemophilus influenzae Rd KW20

50.973

100

0.512
  comM Glaesserella parasuis strain SC1401

50.098

99.805

0.5
  comM Legionella pneumophila str. Paris

47.115

100

0.479
  comM Legionella pneumophila strain ERS1305867

47.115

100

0.479
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.333

99.609

0.432