Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   SR858_RS02000 Genome accession   NZ_CP140152
Coordinates   442470..444053 (-) Length   527 a.a.
NCBI ID   WP_019924474.1    Uniprot ID   -
Organism   Duganella zoogloeoides strain ATCC 25935     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 437470..449053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SR858_RS01990 (SR858_01990) - 439219..441507 (+) 2289 WP_019924476.1 hypothetical protein -
  SR858_RS01995 (SR858_01995) - 441522..442442 (-) 921 WP_019924475.1 DUF6624 domain-containing protein -
  SR858_RS02000 (SR858_02000) comM 442470..444053 (-) 1584 WP_019924474.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  SR858_RS02005 (SR858_02005) - 444234..444965 (+) 732 WP_154820137.1 hypothetical protein -
  SR858_RS02010 (SR858_02010) - 445054..448194 (+) 3141 WP_019924472.1 glycoside hydrolase family 2 TIM barrel-domain containing protein -

Sequence

Protein


Download         Length: 527 a.a.        Molecular weight: 56680.87 Da        Isoelectric Point: 8.2024

>NTDB_id=913073 SR858_RS02000 WP_019924474.1 442470..444053(-) (comM) [Duganella zoogloeoides strain ATCC 25935]
MSLAVLKSRALAGMEAQQVNVEVHLANGLPAFTIVGLADTEVKEAKDRVRAAIQNGGFEFPAQRITVNLAPADLPKESGR
FDLPIALGILAASRQIPADILDQYEFAGELSLSGELRPIRGALAMSLAMTRDAGRDCGHNGEHGKEPVKQRTPPGKADRR
GFILPQANADEAALVNGAAIYPASSLLQVCAHLAASSHEAMLTRHTSALAVAMTEVADLADVKGQFMVKRALEVAAAGNH
SILMVGPPGAGKTMLAARFPGLLPPMTDDEALEAAAVQSLTGGFRIEDWKRRPFRAPHHTASGVALVGGGGYPRPGEISL
AHRGVLFLDELPEFDRRVLDVLRQPMESGRVTISRAAQQAEFPAHFQLIAAMNPCPCGYHGHPSGVCNCTTEQIARYQGR
VSGPLLDRIDMQIEVSAVEPDTLAADADGEPSTAIAVRVQRAAEIQLARQGKRNQFLTTREIDRLCKPDKAGKAKLKRSM
EHFQWSARAYHRILRVARTIADLAGAQGIGEQHIGEAVQYRRALKDR

Nucleotide


Download         Length: 1584 bp        

>NTDB_id=913073 SR858_RS02000 WP_019924474.1 442470..444053(-) (comM) [Duganella zoogloeoides strain ATCC 25935]
ATGAGCCTGGCCGTACTCAAGAGCCGCGCCCTCGCGGGCATGGAAGCGCAGCAAGTCAATGTCGAGGTACACCTGGCCAA
CGGCCTGCCGGCCTTCACCATCGTCGGCCTCGCAGATACCGAAGTGAAGGAGGCCAAGGACCGCGTGCGCGCCGCGATCC
AGAACGGCGGCTTCGAGTTTCCCGCCCAGCGCATTACCGTCAATCTCGCGCCGGCCGACCTGCCCAAGGAATCGGGCCGT
TTTGATTTACCGATCGCACTGGGCATCCTGGCCGCCTCGCGCCAGATTCCCGCCGATATCCTGGACCAGTACGAGTTTGC
CGGCGAGCTGTCGCTGTCGGGCGAGCTGCGACCGATCCGGGGGGCGCTGGCGATGTCGCTGGCGATGACGCGCGATGCCG
GGCGTGATTGCGGACACAATGGCGAGCACGGTAAAGAGCCTGTCAAGCAGCGTACTCCGCCCGGTAAAGCTGACCGGCGT
GGCTTCATCTTGCCGCAAGCCAATGCCGACGAAGCGGCGCTGGTGAACGGCGCCGCCATCTACCCGGCCAGCTCGCTGCT
GCAAGTGTGCGCCCACCTGGCGGCCAGCTCACACGAGGCGATGCTGACCCGGCACACATCTGCGCTGGCGGTGGCCATGA
CCGAGGTGGCCGACCTGGCCGACGTCAAGGGCCAGTTCATGGTCAAGCGCGCGCTGGAGGTGGCGGCGGCCGGCAACCAC
AGCATCTTGATGGTGGGCCCGCCCGGCGCCGGCAAGACCATGCTGGCGGCGCGCTTTCCCGGCCTGCTGCCGCCGATGAC
CGACGACGAAGCGCTGGAAGCGGCGGCCGTGCAGTCGCTCACCGGCGGCTTCCGGATCGAGGACTGGAAGCGCAGGCCGT
TTCGTGCGCCACACCATACGGCATCCGGCGTGGCATTGGTGGGTGGCGGCGGCTATCCGCGTCCGGGAGAAATCTCGCTG
GCCCATCGCGGTGTGCTGTTCCTCGACGAGCTGCCCGAGTTCGACCGGCGCGTACTGGACGTGCTGCGCCAGCCGATGGA
GTCGGGCCGCGTCACCATCTCGCGCGCGGCGCAGCAGGCCGAGTTCCCCGCCCACTTCCAGCTGATCGCCGCGATGAACC
CGTGCCCGTGCGGCTACCACGGCCATCCCAGCGGCGTATGCAACTGCACGACCGAGCAGATCGCCCGTTACCAAGGCCGC
GTCTCGGGCCCCCTGCTCGACCGCATCGACATGCAGATCGAAGTCTCCGCCGTGGAACCCGACACCCTGGCCGCCGACGC
CGACGGCGAACCTTCCACCGCGATTGCCGTCCGCGTGCAACGCGCCGCCGAGATCCAGCTGGCGCGCCAGGGCAAGCGCA
ACCAGTTCCTTACCACCCGCGAAATCGACCGCCTGTGCAAGCCCGACAAGGCAGGCAAGGCCAAGCTCAAACGCAGCATG
GAACACTTCCAGTGGTCAGCCCGCGCCTACCACCGCATCCTGCGCGTGGCGCGCACCATCGCCGACCTGGCCGGGGCCCA
AGGCATCGGCGAACAGCATATCGGGGAGGCGGTGCAGTATCGGCGGGCGTTGAAGGATCGGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(429-521)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(218-421)

Subunit ChlI of Mg-chelatase (ChlI)

(21-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

51.434

99.241

0.51
  comM Vibrio cholerae strain A1552

51.434

99.241

0.51
  comM Haemophilus influenzae Rd KW20

49.81

99.81

0.497
  comM Glaesserella parasuis strain SC1401

49.81

99.81

0.497
  comM Legionella pneumophila str. Paris

47.628

100

0.476
  comM Legionella pneumophila strain ERS1305867

47.628

100

0.476
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.402

100

0.444