Detailed information NTG0913064

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: SR908_RS09185
• Genome accession: NZ_CP140151
• Coordinates: 1927284..1928426 (+)
• Length: 380 a.a.
• NCBI ID: WP_246924026.1
• Uniprot ID: -
• Organism: Chromohalobacter canadensis strain ATCC 43984
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1922284..1933426

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SR908_RS09160 (SR908_09160)	-	1922742..1923902 (-)	1161	WP_040239874.1	homoserine O-acetyltransferase	-
SR908_RS09165 (SR908_09165)	-	1923963..1924553 (-)	591	WP_246924029.1	YggT family protein	-
SR908_RS09170 (SR908_09170)	proC	1924590..1925414 (-)	825	WP_097021300.1	pyrroline-5-carboxylate reductase	-
SR908_RS09175 (SR908_09175)	-	1925464..1926171 (-)	708	WP_097021299.1	YggS family pyridoxal phosphate-dependent enzyme	-
SR908_RS09180 (SR908_09180)	pilT	1926206..1927246 (+)	1041	WP_097021298.1	type IV pilus twitching motility protein PilT	Machinery gene
SR908_RS09185 (SR908_09185)	pilU	1927284..1928426 (+)	1143	WP_246924026.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
SR908_RS09190 (SR908_09190)	-	1928431..1929546 (-)	1116	WP_246924023.1	anhydro-N-acetylmuramic acid kinase	-
SR908_RS09195 (SR908_09195)	tyrS	1929646..1930842 (+)	1197	WP_246924019.1	tyrosine--tRNA ligase	-

Sequence

Protein

• Length: 380 a.a.
• Molecular weight: 42097.93 Da
• Isoelectric Point: 5.5746

>NTDB_id=913064 SR908_RS09185 WP_246924026.1 1927284..1928426(+) (pilU) [Chromohalobacter canadensis strain ATCC 43984]
MTPYEWLTQLLDIMLDKQASDLLISTGAPPSLKINGELVTLGEQAMSVAQVHELVSAALPQGVGERFEAEREANFALSLQ
GKGRFRVSAFYQRSQMAMVVRRIAFDIPDLASLALPDALSELVNRKRGLVFIVGGTGSGKSTTLASMIQHRNQTTGGHVI
SIEDPIEYIHPHGRAIINQREVGIDTESFEVALKNALRQAPDVIMIGEVRSREIMEHALTFAETGHLCLATLHANNANQA
LERIQHFFPSERHEQVWMDLSLNLQAIVAQRLLPREDGEGRCAAVEVMLRSPLVSDLIRKGAIHDLKEVMQRSHDQGMQT
FDQALYALYRQGCISEKMALVHADSANDLRLRIDYGDADSPQLARASDAAERFTLKGDDE

Nucleotide

• Length: 1143 bp

>NTDB_id=913064 SR908_RS09185 WP_246924026.1 1927284..1928426(+) (pilU) [Chromohalobacter canadensis strain ATCC 43984]
ATGACGCCATACGAGTGGCTGACGCAACTGCTGGATATCATGCTCGACAAGCAGGCCTCCGACCTGCTGATTTCGACCGG
GGCGCCGCCGAGTCTCAAGATCAATGGCGAGCTGGTCACGCTGGGCGAGCAGGCGATGTCGGTGGCGCAGGTGCACGAGT
TGGTCTCGGCGGCGCTGCCTCAGGGCGTGGGTGAGCGTTTCGAGGCCGAACGTGAGGCCAACTTCGCGCTCAGCCTGCAG
GGCAAGGGGCGCTTTCGCGTGAGTGCCTTCTATCAGCGCAGCCAGATGGCGATGGTCGTGCGCCGCATTGCCTTCGATAT
TCCTGACTTGGCGAGCCTGGCGTTGCCGGATGCCTTGAGTGAGCTGGTCAATCGCAAGCGTGGCCTGGTGTTCATCGTCG
GTGGCACAGGCAGTGGCAAGTCGACCACGCTGGCGTCGATGATTCAGCATCGCAATCAGACGACCGGCGGGCATGTCATC
AGTATCGAGGATCCCATCGAATACATTCACCCGCATGGCCGCGCGATTATCAATCAGCGTGAGGTGGGCATCGATACCGA
ATCCTTCGAGGTGGCGCTCAAGAATGCGCTGCGTCAGGCGCCCGATGTGATCATGATCGGTGAGGTCCGCTCGCGCGAGA
TCATGGAGCATGCGTTGACGTTTGCCGAGACCGGTCATCTGTGTCTGGCGACGCTGCATGCCAACAACGCCAATCAGGCG
CTGGAGCGGATTCAGCATTTCTTCCCCAGCGAGCGCCACGAACAGGTGTGGATGGACCTATCGCTCAATTTGCAGGCCAT
CGTTGCCCAGCGGTTGTTGCCCCGTGAGGATGGCGAGGGGCGATGTGCGGCGGTCGAAGTGATGCTGCGTTCGCCGCTGG
TCAGTGATCTTATCCGCAAGGGGGCGATTCACGACCTCAAGGAGGTCATGCAGCGCTCCCACGACCAGGGAATGCAGACC
TTCGATCAGGCGCTATATGCACTCTATCGGCAAGGGTGCATCAGCGAAAAGATGGCATTGGTGCATGCCGACTCAGCTAA
TGATCTGCGGTTGCGCATCGATTATGGCGATGCCGATAGCCCGCAATTGGCACGCGCCAGCGATGCCGCCGAGCGTTTTA
CCCTTAAAGGCGACGATGAATGA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (16-274)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	59.444	94.737	0.563
pilU	Acinetobacter baylyi ADP1	54.133	98.684	0.534
pilU	Vibrio cholerae strain A1552	57.022	93.684	0.534
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	44.023	90.263	0.397