Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   U1R67_RS11480 Genome accession   NZ_CP140118
Coordinates   2455742..2457259 (-) Length   505 a.a.
NCBI ID   WP_342040070.1    Uniprot ID   -
Organism   Aeromonas caviae strain A20-9     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2450742..2462259
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U1R67_RS11455 (U1R67_11460) - 2451878..2452513 (-) 636 WP_342040066.1 nicotinamidase -
  U1R67_RS11460 (U1R67_11465) - 2452588..2453238 (+) 651 WP_342040067.1 DNA mismatch repair protein MutT -
  U1R67_RS11465 (U1R67_11470) - 2453315..2453800 (+) 486 WP_342040068.1 DUF523 domain-containing protein -
  U1R67_RS11470 (U1R67_11475) - 2453746..2454702 (-) 957 WP_045522722.1 acyltransferase -
  U1R67_RS11475 (U1R67_11480) - 2454710..2455609 (-) 900 WP_342040069.1 acyltransferase -
  U1R67_RS11480 (U1R67_11485) comM 2455742..2457259 (-) 1518 WP_342040070.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  U1R67_RS11485 (U1R67_11490) ilvG 2457644..2459290 (+) 1647 WP_342040071.1 acetolactate synthase 2 catalytic subunit -
  U1R67_RS11490 (U1R67_11495) ilvM 2459287..2459544 (+) 258 WP_010676086.1 acetolactate synthase 2 small subunit -
  U1R67_RS11495 (U1R67_11500) - 2459557..2460501 (+) 945 WP_342040072.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 505 a.a.        Molecular weight: 54674.62 Da        Isoelectric Point: 7.4700

>NTDB_id=912876 U1R67_RS11480 WP_342040070.1 2455742..2457259(-) (comM) [Aeromonas caviae strain A20-9]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPAKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPSVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPEPQSAETLPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGTHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPRGSLTGKAERG
ESSQQIRERVLGARERMLSRSGKLNNLLDSREIEDVCKLSPQDAEFLEGAIQKLGLSIRAWHRILRVSRTIADLAGHVTI
ERAHLIEALGYRAMDRLLSRLRGGQ

Nucleotide


Download         Length: 1518 bp        

>NTDB_id=912876 U1R67_RS11480 WP_342040070.1 2455742..2457259(-) (comM) [Aeromonas caviae strain A20-9]
ATGTCATTAGCTGTTGTTTATAGCCGTGCCAGCCTGGGGATAGCGGCGCCGCAAGTCACGGTGGAGGTGCACCTCTCCAA
CGGCCTGCCCGCCTTCAACATGGTGGGGTTGCCGGAAACCTCGGTGAAGGAGTCGCGGGATCGGGTGCGCAGCGCCCTTC
TCAACGGCAATTTCGAATTTCCGGCCAAGCACATCACGGTCAACCTGGCCCCTGCGGATCTGCCCAAAGAGGGGGGCCGC
TTCGACCTGGCCATCGCCATCGGCATTCTCGCCGCATCCAAGCAGATACCCGCAAAATACCTGCTCGATCACGAATTTTT
AGGGGAATTGGCCCTGACGGGCGAGATCCGCCCCGTGCTTGGGGTGCTCCCCTCGGTGCTCGCCTGCCGCGACGCGGGGC
GCACCCTGCTGGTCCCACGGGAGAACGGTCCGGAGGCTTCCCTCATACAGGATGCCGAGGTGCGCACCGCCCACCAGCTG
CTGGCGGTCACCGCCTGGCTGGCGGGCCAGTACGAACTGCCGCTGCCGGAACCCCAGAGCGCGGAGACCCTGCCCGACGT
GCCGGATCTGCAGGATGTGATCGGTCAGTCCCAGGCGAAGCGGGCGCTGGAGATCGCCGCAGCTGGCAGCCACAACCTGC
TGTTCATCGGCCCCCCCGGCACCGGCAAGAGCATGTTGGCCAGCCGTCTGCCCGGCATTCTGCCACCGCTGAGCGAACAG
GAGGCGCAGCAGACCGCAGCCATTCACTCCATCGGCGGCCTCACTCCCCGCGCCGGCCACTGGCACCACAGGCCGTATCG
CACGCCCCATCACAGCGCCTCGGCAGTGGCGCTGGTGGGCGGGGGTACCCATCCCAGGCCTGGCGAAATTTCCCTCGCCC
ACAACGGGGTCCTGTTTCTGGATGAACTGCCGGAGTTCGAGCGCAAGGTGCTCGACTCCCTTCGCGAGCCGCTGGAAACC
GGGCACATCACCATCAGTCGTGCCGCCCGCCAGGTGGATTTTCCCGCCCGCTTCCAACTGGTGGGTGCCATGAATCCCAG
CCCCTGCGGCCATTATGGCGACGGCCAGACCCGCTCCAGCCCGGATCAGATCCTGCGCTATCTGGGCAAGCTCTCCGGCC
CCTTTCTCGACAGGTTCGATCTGACGGTAGAGGTCCCGCTCTTGCCCAGGGGGAGCCTGACCGGCAAGGCGGAGCGGGGG
GAGTCGAGCCAGCAGATACGCGAACGGGTGCTGGGGGCGCGAGAGCGCATGCTGAGTCGCAGCGGAAAACTCAACAACCT
GCTGGATAGTCGAGAAATCGAAGATGTTTGCAAATTATCGCCACAGGATGCCGAATTTCTGGAAGGTGCCATCCAGAAGC
TGGGGCTCAGCATCCGGGCCTGGCACCGCATCCTGCGGGTATCACGCACCATCGCCGATCTGGCGGGACACGTCACCATC
GAGAGAGCGCATCTGATCGAAGCCCTGGGCTATCGTGCCATGGACAGGCTGTTGTCGCGGCTGCGCGGGGGCCAGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.745

99.406

0.634
  comM Haemophilus influenzae Rd KW20

62.055

100

0.622
  comM Vibrio campbellii strain DS40M4

62.151

99.406

0.618
  comM Glaesserella parasuis strain SC1401

60.827

100

0.612
  comM Legionella pneumophila str. Paris

50.992

99.802

0.509
  comM Legionella pneumophila strain ERS1305867

50.992

99.802

0.509
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.972

100

0.463