Detailed information NTG0091255

Bioinformatically predicted

Overview

• Name: radC
• Type: Machinery gene
• Locus tag: AABK12_RS05605
• Genome accession: NZ_AP027873
• Coordinates: 1129824..1130300 (+)
• Length: 158 a.a.
• NCBI ID: WP_001186773.1
• Uniprot ID: -
• Organism: Escherichia coli strain 2018-02-2CC
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1124824..1135300

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AABK12_RS05565 (VEE78_10790)	cobU	1125339..1125884 (-)	546	WP_000973176.1	bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase	-
AABK12_RS05570	-	1126036..1126209 (-)	174	Protein_1092	cobalamin biosynthesis protein	-
AABK12_RS05575	-	1126188..1126376 (-)	189	Protein_1093	IS4 family transposase	-
AABK12_RS05580 (VEE78_10800)	-	1126441..1127138 (+)	698	WP_250845857.1	IS1-like element IS1A family transposase	-
AABK12_RS05585 (VEE78_10810)	-	1127135..1127779 (+)	645	WP_172410788.1	hypothetical protein	-
AABK12_RS05590 (VEE78_10820)	-	1127795..1128205 (+)	411	WP_000846713.1	hypothetical protein	-
AABK12_RS05595 (VEE78_10830)	-	1128426..1129247 (+)	822	WP_001234530.1	DUF932 domain-containing protein	-
AABK12_RS05600 (VEE78_10840)	-	1129329..1129808 (+)	480	WP_000860076.1	antirestriction protein	-
AABK12_RS05605 (VEE78_10850)	radC	1129824..1130300 (+)	477	WP_001186773.1	RadC family protein	Machinery gene
AABK12_RS05610 (VEE78_10860)	yeeT	1130363..1130584 (+)	222	WP_000692323.1	DUF987 domain-containing protein	-
AABK12_RS05615 (VEE78_10870)	cbeA	1130658..1131026 (+)	369	WP_172410599.1	type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA	-
AABK12_RS05620 (VEE78_10880)	cbtA	1131115..1131488 (+)	374	Protein_1102	type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA	-
AABK12_RS05625 (VEE78_10890)	yeeW	1131485..1131679 (+)	195	WP_000988599.1	DUF5983 family protein	-
AABK12_RS05630	-	1131725..1131805 (+)	81	Protein_1104	hypothetical protein	-
AABK12_RS05635	-	1132094..1132267 (-)	174	WP_032082634.1	transposase domain-containing protein	-
AABK12_RS05640	-	1132294..1132476 (+)	183	WP_001016348.1	EutP/PduV family microcompartment system protein	-
AABK12_RS05645 (VEE78_10900)	tmaR	1132577..1132906 (-)	330	WP_000450409.1	DUF496 family protein	-
AABK12_RS05650 (VEE78_10910)	yeeA	1133078..1134136 (-)	1059	WP_001200891.1	FUSC family protein	-
AABK12_RS05655 (VEE78_10920)	sbmC	1134335..1134808 (-)	474	Protein_1109	DNA gyrase inhibitor SbmC	-

Sequence

Protein

• Length: 158 a.a.
• Molecular weight: 17688.29 Da
• Isoelectric Point: 7.2020

>NTDB_id=91255 AABK12_RS05605 WP_001186773.1 1129824..1130300(+) (radC) [Escherichia coli strain 2018-02-2CC]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide

• Length: 477 bp

>NTDB_id=91255 AABK12_RS05605 WP_001186773.1 1129824..1130300(+) (radC) [Escherichia coli strain 2018-02-2CC]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAACTGATTGCCGGTGAAACCCTCTTTACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCCTCCGGTGAAGTCACACCCAGTAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

• RadC-like JAB domain (RadC) (38-157)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radC	Haemophilus influenzae Rd KW20	54.867	71.519	0.392