Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   SO574_RS13860 Genome accession   NZ_CP140102
Coordinates   3026843..3028366 (-) Length   507 a.a.
NCBI ID   WP_322803355.1    Uniprot ID   -
Organism   Vibrio alfacsensis strain VA-1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3021843..3033366
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SO574_RS13840 (SO574_13840) - 3023125..3024111 (+) 987 WP_221069969.1 serine/threonine protein kinase -
  SO574_RS13845 (SO574_13845) - 3024146..3024748 (+) 603 WP_221068385.1 thiol:disulfide interchange protein DsbA/DsbL -
  SO574_RS13850 (SO574_13850) - 3024791..3025669 (-) 879 WP_322803353.1 acyltransferase -
  SO574_RS13855 (SO574_13855) - 3025835..3026791 (+) 957 WP_322803354.1 DUF2860 domain-containing protein -
  SO574_RS13860 (SO574_13860) comM 3026843..3028366 (-) 1524 WP_322803355.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  SO574_RS13865 (SO574_13865) ilvG 3028842..3030488 (+) 1647 WP_322803356.1 acetolactate synthase 2 catalytic subunit -
  SO574_RS13870 (SO574_13870) ilvM 3030500..3030784 (+) 285 WP_005440786.1 acetolactate synthase 2 small subunit -
  SO574_RS13875 (SO574_13875) ilvE 3030797..3031735 (+) 939 WP_322803357.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55101.95 Da        Isoelectric Point: 7.6418

>NTDB_id=912540 SO574_RS13860 WP_322803355.1 3026843..3028366(-) (comM) [Vibrio alfacsensis strain VA-1]
MGLAIIHSRASVGVQAPSVSVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIINSNFQFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQIATNTLKNYEFVGELALSGGLRPVKGVLPAALAANKSQRHLVVPHDNGDQAALVGKEQHKSAQSL
LEVCAELCGQHRLELHQTSKRHVVEHHGRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMTD
EEAMETASVASLTQSEINEHNWKTRPLRSPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFDRKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLIGALNPSPTGYYEGNQARTNPQAILRYLSRLSGPLLDRFDMSLEIPSLPKGTLAEGGDR
GEPTAVVKERVNQARECMLNRSGKVNALLGSREIEAFCPLQKNDAEFLENALHRLGLSIRAYHRIIKVARTIADLEGSEQ
IERSHLAEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=912540 SO574_RS13860 WP_322803355.1 3026843..3028366(-) (comM) [Vibrio alfacsensis strain VA-1]
ATGGGGCTGGCGATCATTCATAGTCGCGCAAGTGTGGGAGTGCAAGCGCCCTCAGTAAGCGTGGAGGTTCACATTAGTAA
TGGAATGCCCGGGTTTACGCTAGTCGGGTTGCCTGAGACTACCGTTAAGGAATCTAAAGATAGGGTCCGTAGCGCTATTA
TTAACTCGAACTTTCAGTTTCCTGCTAAGAGAATTACGGTCAATCTAGCGCCTGCTGACTTGCCTAAAGAGGGAGGGAGG
TTTGACTTACCTATCGCCTTGGGTATTTTGGCTGCTTCAGAGCAAATTGCGACAAATACCCTCAAAAATTACGAATTTGT
TGGTGAACTTGCGCTTTCTGGTGGTTTGAGACCAGTAAAAGGCGTTCTTCCGGCGGCTCTTGCCGCAAATAAAAGTCAGC
GTCATTTAGTGGTACCTCATGACAACGGCGATCAAGCGGCTTTAGTTGGGAAAGAACAACACAAATCGGCCCAGTCGTTA
CTTGAAGTTTGCGCGGAACTTTGCGGTCAACACCGTCTTGAATTGCACCAAACGTCTAAGCGCCATGTCGTGGAACATCA
TGGCCGAGATTTGCAAGATATTATTGGTCAACAACAGGGAAAGCGGGCATTAGAAATTGCGGCAGCGGGAAACCATAACC
TGCTTTTTCTTGGCCCACCTGGTACAGGTAAAACCATGCTGGCTTCGCGACTGTGTGATTTATTGCCCGAAATGACTGAC
GAAGAAGCGATGGAGACCGCGTCCGTAGCCTCATTGACTCAAAGTGAAATCAACGAGCACAATTGGAAAACACGGCCGCT
GCGTAGTCCGCATCATTCAAGTTCAATGGCTGCGTTGGTTGGGGGAGGATCTGTCCCTCGACCTGGAGAGATTTCTTTGG
CACACAACGGATTATTGTTCTTAGATGAAATGCCCGAATTTGATCGCAAGGTGCTCGACTCTTTGCGAGAACCGTTAGAG
TCAGGCGAAATCATTATTTCTCGAGCGCAAGGTAAGACACGTTTTCCTGCTCGTTTTCAATTGATTGGGGCACTCAATCC
AAGCCCCACAGGGTATTACGAGGGTAATCAAGCACGGACCAATCCTCAGGCTATTTTGCGTTATCTTAGTCGTTTATCTG
GCCCGCTGCTTGATCGTTTTGATATGTCTTTAGAAATACCGTCTCTTCCGAAAGGGACGCTTGCAGAGGGTGGGGATAGA
GGTGAACCAACGGCAGTTGTAAAAGAGCGAGTGAATCAAGCGAGGGAGTGTATGCTTAATCGCAGTGGTAAGGTGAATGC
GTTGCTAGGAAGCCGCGAGATAGAAGCATTTTGCCCTTTGCAAAAAAACGATGCAGAGTTTTTAGAGAATGCACTTCATC
GACTTGGACTCTCGATTCGTGCTTATCACCGCATTATTAAAGTGGCTCGAACGATCGCGGATCTTGAAGGTTCAGAGCAA
ATTGAACGCTCTCATTTAGCTGAAGCGTTAGGTTACCGTGCGATGGACCGATTGCTTAAACAACTGACGGCACAAGCCGT
ATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

94.083

100

0.941
  comM Vibrio cholerae strain A1552

85.01

100

0.85
  comM Haemophilus influenzae Rd KW20

66.272

100

0.663
  comM Glaesserella parasuis strain SC1401

64.118

100

0.645
  comM Legionella pneumophila str. Paris

49.395

97.83

0.483
  comM Legionella pneumophila strain ERS1305867

49.395

97.83

0.483
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.291

100

0.444