Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SO574_RS12055 Genome accession   NZ_CP140102
Coordinates   2651539..2652072 (-) Length   177 a.a.
NCBI ID   WP_128810047.1    Uniprot ID   -
Organism   Vibrio alfacsensis strain VA-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2646539..2657072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SO574_RS12035 (SO574_12035) - 2646881..2647213 (-) 333 WP_128810051.1 MSHA biogenesis protein MshK -
  SO574_RS12040 (SO574_12040) gspM 2647206..2647856 (-) 651 WP_322803207.1 type II secretion system protein GspM -
  SO574_RS12045 (SO574_12045) - 2647853..2649301 (-) 1449 WP_322803208.1 MSHA biogenesis protein MshI -
  SO574_RS12050 (SO574_12050) csrD 2649313..2651322 (-) 2010 WP_322803209.1 RNase E specificity factor CsrD -
  SO574_RS12055 (SO574_12055) ssb 2651539..2652072 (-) 534 WP_128810047.1 single-stranded DNA-binding protein Machinery gene
  SO574_RS12060 (SO574_12060) qstR 2652350..2652994 (+) 645 WP_128810046.1 LuxR C-terminal-related transcriptional regulator Regulator
  SO574_RS12065 (SO574_12065) galU 2653154..2654026 (+) 873 WP_211915879.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  SO574_RS12070 (SO574_12070) uvrA 2654205..2657027 (+) 2823 WP_322803210.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19804.86 Da        Isoelectric Point: 4.8950

>NTDB_id=912530 SO574_RS12055 WP_128810047.1 2651539..2652072(-) (ssb) [Vibrio alfacsensis strain VA-1]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSDSWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQNQQGQDQYTTEVVVQGFNGVMQMLGGRAQGGAPMGGQQQQQQQGSWGQPQQPAQQQYNAPQQQQQAPQQP
QQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=912530 SO574_RS12055 WP_128810047.1 2651539..2652072(-) (ssb) [Vibrio alfacsensis strain VA-1]
ATGGCCAGCCGTGGAATTAACAAAGTTATCTTAGTGGGAAATCTTGGCAATGACCCAGAAATTCGTTACATGCCTAATGG
CGGTGCAGTAGCAAACATTACTATTGCTACCTCTGACTCATGGCGCGATAAAGCGACTGGTGAACAGCGCGAAAAAACGG
AATGGCACCGTGTAGTGCTATTCGGTAAGCTAGCTGAAGTAGCAGGTGAATACCTACGTAAAGGCTCACAAGTTTACATT
GAAGGTCAATTGCAAACACGTAAGTGGCAAAACCAACAAGGCCAAGATCAGTACACAACAGAAGTTGTAGTACAAGGTTT
TAATGGCGTTATGCAAATGCTTGGTGGCCGTGCTCAAGGTGGCGCTCCAATGGGTGGTCAACAACAGCAGCAGCAACAAG
GTAGTTGGGGTCAGCCACAACAACCTGCACAGCAGCAGTACAATGCACCACAACAGCAGCAACAGGCTCCGCAGCAACCA
CAGCAGCAATACAATGAGCCACCAATGGATTTCGATGACGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

78.771

100

0.797
  ssb Glaesserella parasuis strain SC1401

55.789

100

0.599
  ssb Neisseria meningitidis MC58

46.667

100

0.475
  ssb Neisseria gonorrhoeae MS11

46.667

100

0.475