Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   SO574_RS12060 Genome accession   NZ_CP140102
Coordinates   2652350..2652994 (+) Length   214 a.a.
NCBI ID   WP_128810046.1    Uniprot ID   -
Organism   Vibrio alfacsensis strain VA-1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2647350..2657994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SO574_RS12045 (SO574_12045) - 2647853..2649301 (-) 1449 WP_322803208.1 MSHA biogenesis protein MshI -
  SO574_RS12050 (SO574_12050) csrD 2649313..2651322 (-) 2010 WP_322803209.1 RNase E specificity factor CsrD -
  SO574_RS12055 (SO574_12055) ssb 2651539..2652072 (-) 534 WP_128810047.1 single-stranded DNA-binding protein Machinery gene
  SO574_RS12060 (SO574_12060) qstR 2652350..2652994 (+) 645 WP_128810046.1 LuxR C-terminal-related transcriptional regulator Regulator
  SO574_RS12065 (SO574_12065) galU 2653154..2654026 (+) 873 WP_211915879.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  SO574_RS12070 (SO574_12070) uvrA 2654205..2657027 (+) 2823 WP_322803210.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24682.66 Da        Isoelectric Point: 9.4033

>NTDB_id=912531 SO574_RS12060 WP_128810046.1 2652350..2652994(+) (qstR) [Vibrio alfacsensis strain VA-1]
MKKSAYARKLFLVSVEKHAERKVEAIEKYMDIEIPVITTDALMEANPTHRNKILVIDYAEHKYLIQSIKNLPLIWKNFET
VVFNVPKRLTTDDLLTLGQLKGIFYQYQSTEQVGEGLMGIINGQNWLPRNVTSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQAGSSNIQMAEDLFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=912531 SO574_RS12060 WP_128810046.1 2652350..2652994(+) (qstR) [Vibrio alfacsensis strain VA-1]
GTGAAAAAATCAGCTTACGCGAGAAAACTGTTTCTTGTCAGCGTAGAAAAACATGCTGAAAGAAAAGTAGAAGCGATAGA
GAAATACATGGATATCGAGATCCCGGTCATTACTACGGATGCCTTGATGGAGGCGAATCCTACACACCGCAACAAGATAT
TAGTGATTGACTATGCTGAACACAAATACCTGATTCAATCTATAAAGAACCTACCGCTGATTTGGAAGAACTTTGAGACC
GTCGTGTTCAACGTCCCAAAACGTCTCACCACTGATGACTTGCTGACACTCGGACAGCTAAAAGGTATTTTCTACCAGTA
CCAATCCACAGAACAAGTTGGAGAGGGACTCATGGGTATTATCAATGGGCAAAACTGGTTACCAAGAAATGTCACAAGCC
AACTGCTCCATTACTATCGCAATGTGATCAATACACATACGGCACCAGCAACCGTTGATTTAACTATCCGTGAGCTCCAA
GTGCTTCGCTGTTTGCAAGCAGGCTCTTCAAACATTCAAATGGCGGAAGATCTTTTCGTCAGTGAATTCACCATCAAGTC
ACACTTGTATCAGATTTTTAAAAAGCTTTCGGTAAAAAATCGAGTTCAAGCAATAGCTTGGGCAGATCAAAACCTAATGT
CTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

85.047

100

0.85
  qstR Vibrio parahaemolyticus RIMD 2210633

83.645

100

0.836
  qstR Vibrio cholerae strain A1552

52.336

100

0.523