Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   U0037_RS29925 Genome accession   NZ_CP140009
Coordinates   6510467..6511963 (+) Length   498 a.a.
NCBI ID   WP_015886509.1    Uniprot ID   C3K446
Organism   Pseudomonas marginalis strain SBW25     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6505467..6516963
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0037_RS29890 (U0037_29890) - 6505562..6506257 (+) 696 WP_015886503.1 HAD family hydrolase -
  U0037_RS29895 (U0037_29895) sutA 6506442..6506768 (-) 327 WP_015886504.1 transcriptional regulator SutA -
  U0037_RS29900 (U0037_29900) - 6506872..6507297 (-) 426 WP_015886505.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  U0037_RS29905 (U0037_29905) - 6507509..6508849 (-) 1341 WP_015886506.1 ammonium transporter -
  U0037_RS29910 (U0037_29910) glnK 6508884..6509222 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  U0037_RS29915 (U0037_29915) - 6509643..6509903 (+) 261 WP_015886507.1 accessory factor UbiK family protein -
  U0037_RS29920 (U0037_29920) - 6509972..6510373 (+) 402 WP_043206052.1 hypothetical protein -
  U0037_RS29925 (U0037_29925) comM 6510467..6511963 (+) 1497 WP_015886509.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  U0037_RS29930 (U0037_29930) - 6512035..6514011 (-) 1977 WP_015886510.1 methyl-accepting chemotaxis protein -
  U0037_RS29935 (U0037_29935) - 6514189..6515109 (-) 921 WP_015886511.1 LysR substrate-binding domain-containing protein -
  U0037_RS29940 (U0037_29940) - 6515262..6516665 (+) 1404 WP_043206054.1 NorM family multidrug efflux MATE transporter -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53442.81 Da        Isoelectric Point: 8.2605

>NTDB_id=912443 U0037_RS29925 WP_015886509.1 6510467..6511963(+) (comM) [Pseudomonas marginalis strain SBW25]
MSLAIVHSRAQIGVEAPAVTVEVHMANGLPSLTLVGLPETAVKESKDRVRSAILNSALQYPSRRITLNLAPADLPKDGGR
FDLAIALGILAASVQVPALMLDDVECLGELALSGEVRAVKGVLPAALAARKAGRTLIVPRANAEEACLASGLKVIAVDHL
LQVVAHLNGHVPIEPYKSDGLLYLNKPYPDLSEVQGQLAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLSE
QEALEVAAIQSVVSLAPLSHWPHRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVISRARDRVSFPARFQLVAAMNPCPCGYLGEPSGRCRCTPEQIQRYRNKLSGPLMDRIDLHLTVARETTALNPIQQA
GDTTAKASAEVAEARERQLRRQGCANAFLDLPGLRRHCTLAKVDEGWLETACERLTLSLRAAHRLLKVARTLADLEQGDA
ITRDHLKEALQYRPAAIT

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=912443 U0037_RS29925 WP_015886509.1 6510467..6511963(+) (comM) [Pseudomonas marginalis strain SBW25]
ATGTCCCTCGCCATTGTCCACAGCCGCGCCCAGATCGGCGTCGAAGCCCCTGCCGTCACCGTCGAAGTGCACATGGCCAA
TGGTCTGCCGTCGCTGACGCTGGTGGGCTTGCCGGAAACGGCGGTCAAGGAAAGCAAGGACCGCGTGCGCAGCGCGATCC
TTAACTCCGCGCTTCAATACCCGTCCCGCCGCATCACCCTCAACCTCGCGCCCGCCGACTTGCCCAAGGACGGCGGGCGT
TTTGACTTGGCGATTGCCTTGGGGATCCTGGCCGCCAGTGTGCAGGTGCCGGCGCTGATGCTCGATGACGTGGAGTGCCT
TGGGGAGCTGGCGCTGTCCGGTGAAGTCCGGGCGGTGAAAGGTGTGTTGCCGGCCGCATTGGCGGCACGCAAGGCCGGGC
GTACCCTGATAGTGCCGCGGGCGAATGCCGAGGAGGCGTGCCTGGCTTCAGGGTTGAAGGTGATCGCGGTGGATCACTTG
CTGCAGGTGGTGGCGCACTTGAATGGGCATGTGCCGATTGAACCGTATAAGTCCGACGGCTTGCTGTACTTGAATAAGCC
GTATCCAGACCTGAGTGAAGTCCAGGGCCAATTGGCGGCCAAGCGCGCGCTGCTGATCGCCGCGGCGGGCGCACATAACC
TGTTGTTCAGCGGGCCGCCGGGCACGGGAAAGACGTTGCTCGCCAGCCGACTGCCGGGGTTGTTGCCCCCCCTGAGTGAA
CAGGAGGCTTTGGAAGTGGCTGCGATTCAGTCGGTCGTCAGCCTGGCGCCGCTGAGCCATTGGCCGCACCGGCCGTTTCG
CCAGCCACACCATTCCGCCTCAGGACCAGCGCTGGTGGGAGGCGGCTCGAAACCGCAGCCGGGGGAGATCACCCTGGCCC
ATCACGGGGTGCTGTTCCTGGATGAGCTGCCGGAATTTGATCGCAAAGTGCTGGAGGTACTGCGTGAACCCTTGGAGTCG
GGGCATATCGTGATTTCCCGCGCCCGTGACCGAGTGAGTTTCCCGGCGCGCTTTCAACTGGTGGCGGCCATGAACCCCTG
CCCCTGCGGCTACCTGGGTGAACCCAGTGGGCGCTGTCGTTGTACGCCGGAGCAAATTCAGCGCTATCGCAACAAGCTGT
CCGGGCCGTTGATGGATCGCATCGACCTGCACCTGACCGTTGCTCGGGAAACCACTGCGCTGAATCCAATCCAGCAGGCC
GGCGATACCACAGCGAAGGCCTCGGCAGAGGTAGCCGAGGCACGGGAGCGCCAGTTGCGGCGTCAGGGCTGCGCGAATGC
CTTCCTTGACCTGCCTGGGCTACGCCGTCACTGCACGCTGGCAAAGGTCGATGAAGGCTGGCTGGAGACCGCCTGCGAGC
GATTGACCCTGTCGCTGCGTGCGGCGCATCGGCTGCTCAAGGTGGCGCGGACCCTGGCGGATCTGGAGCAGGGAGATGCC
ATCACGCGCGACCATCTGAAGGAGGCCTTGCAATACCGCCCGGCGGCGATCACTTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C3K446

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

55.96

99.398

0.556
  comM Vibrio cholerae strain A1552

55.758

99.398

0.554
  comM Glaesserella parasuis strain SC1401

55

100

0.552
  comM Haemophilus influenzae Rd KW20

54.8

100

0.55
  comM Legionella pneumophila str. Paris

50.806

99.598

0.506
  comM Legionella pneumophila strain ERS1305867

50.806

99.598

0.506
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.726

100

0.462