Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   U0028_RS29570 Genome accession   NZ_CP140007
Coordinates   6379715..6381205 (+) Length   496 a.a.
NCBI ID   WP_114941872.1    Uniprot ID   A0A7V8EB98
Organism   Pseudomonas putida strain HAMBI_0006     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6374715..6386205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0028_RS29550 (U0028_29555) - 6374942..6376273 (-) 1332 WP_016502193.1 ammonium transporter -
  U0028_RS29555 (U0028_29560) glnK 6376320..6376658 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  U0028_RS29560 (U0028_29565) - 6377076..6377339 (+) 264 WP_049273661.1 accessory factor UbiK family protein -
  U0028_RS29565 (U0028_29570) - 6377438..6379456 (-) 2019 WP_114941873.1 DUF4034 domain-containing protein -
  U0028_RS29570 (U0028_29575) comM 6379715..6381205 (+) 1491 WP_114941872.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  U0028_RS29575 (U0028_29580) - 6381402..6383189 (+) 1788 WP_114941871.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  U0028_RS29580 (U0028_29585) - 6383194..6383478 (-) 285 WP_016502199.1 HigA family addiction module antitoxin -
  U0028_RS29585 (U0028_29590) - 6383491..6383769 (-) 279 WP_114941870.1 type II toxin-antitoxin system RelE/ParE family toxin -
  U0028_RS29590 (U0028_29595) - 6383995..6384153 (-) 159 Protein_5834 hydrolase -
  U0028_RS29595 (U0028_29600) - 6384276..6385187 (+) 912 WP_049273652.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 52825.54 Da        Isoelectric Point: 7.7103

>NTDB_id=912397 U0028_RS29570 WP_114941872.1 6379715..6381205(+) (comM) [Pseudomonas putida strain HAMBI_0006]
MSLAIVHSRAQVGVQAPSVSVETHLANGLPHLTLVGLPETTVKESKDRVRSAIVNSGLNYPQRRITQNLAPADLPKDGGR
YDLAIALGILAADGQVPAASLAEVECLGELALSGKLRAVQGVLPAALAAREAGRSLVVPRENAEEASLAGGLVVYAVGHL
LELVAHLTGQVPLAPYAANGLVLHQRPYPDLSEVQGQLAAKRALMLAAAGAHNLLFTGPPGTGKTLLASRLPGLLPPLDE
HEALEVAAIQSVSGHTPLNSWPQRPFRHPHHSASGPALVGGSSRPQPGEITLAHHGVLFLDELPEFERRVLEVLREPLES
GEIVIARARDKVRFPARFQLVAAMNPCPCGYLGDPTGRCRCSTEQIARYRNKLSGPLLDRIDLHLTVARESTTLNNQPCG
EASADVAARVAQAREVQQRRQGCVNAFLDLEGLRRHCGLAAADQAWLEGACERLTLSLRAAHRLLKVARTLADLEGCEAI
GRPHLAEALQYRPGSS

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=912397 U0028_RS29570 WP_114941872.1 6379715..6381205(+) (comM) [Pseudomonas putida strain HAMBI_0006]
ATGTCCCTAGCCATCGTCCACAGCCGCGCCCAGGTGGGTGTGCAGGCACCCTCGGTCAGCGTCGAAACCCACCTGGCCAA
CGGCCTGCCTCATCTCACCCTGGTTGGCCTGCCAGAAACCACGGTAAAGGAGAGCAAAGACCGGGTACGCAGTGCCATCG
TCAACTCCGGGCTGAACTATCCACAGCGGCGCATAACCCAGAACCTGGCCCCCGCCGACTTGCCCAAGGACGGCGGGCGC
TACGACCTGGCCATTGCCCTGGGCATTCTGGCCGCCGACGGCCAGGTGCCAGCGGCCAGCCTTGCAGAGGTCGAGTGCCT
GGGCGAACTGGCGTTGTCGGGCAAATTGCGGGCGGTGCAAGGCGTCCTGCCGGCGGCCTTGGCGGCACGCGAGGCGGGCC
GCTCGCTGGTGGTTCCACGGGAAAATGCCGAGGAAGCCAGCCTGGCCGGCGGGCTGGTGGTGTATGCGGTGGGGCACCTG
CTGGAGCTGGTTGCCCATCTGACCGGCCAGGTGCCGCTGGCGCCTTACGCGGCCAACGGGTTGGTCCTGCATCAACGTCC
CTACCCTGACCTGAGCGAGGTCCAAGGCCAGCTGGCGGCCAAACGCGCATTGATGCTGGCGGCGGCTGGGGCGCACAACC
TGCTATTCACCGGGCCACCCGGCACCGGCAAGACCTTGCTCGCCAGCCGCCTGCCAGGGCTGCTGCCACCGTTGGACGAG
CACGAGGCGCTCGAGGTGGCGGCCATCCAGTCGGTCAGCGGGCATACACCGCTGAACAGCTGGCCGCAGCGACCCTTTCG
CCACCCCCACCACTCCGCATCCGGCCCGGCACTGGTCGGTGGCAGCAGCCGTCCGCAACCGGGCGAAATCACCCTCGCCC
ACCATGGCGTGCTGTTTCTCGATGAGCTGCCAGAGTTCGAGCGGCGTGTGCTGGAGGTACTGCGCGAGCCGCTGGAATCG
GGCGAGATCGTGATTGCCCGCGCCCGCGACAAGGTGCGCTTTCCGGCACGCTTTCAGCTGGTGGCGGCGATGAACCCATG
CCCTTGCGGCTACCTGGGTGACCCCACTGGCCGCTGCCGTTGCAGCACCGAGCAGATCGCGCGGTACCGCAACAAGCTGT
CCGGGCCGCTGCTGGACCGCATCGACCTGCACCTGACCGTGGCCCGCGAAAGCACCACGCTGAACAACCAGCCCTGTGGT
GAAGCCAGTGCCGATGTGGCTGCAAGGGTGGCGCAGGCGCGGGAGGTACAGCAGCGCCGGCAAGGGTGTGTGAATGCGTT
TCTCGACCTCGAAGGGTTGCGCCGCCATTGCGGATTGGCCGCGGCGGACCAGGCCTGGCTGGAAGGGGCATGCGAACGGT
TGACGTTGTCGTTGCGGGCAGCGCACCGGTTATTGAAAGTGGCACGAACACTGGCGGACCTGGAGGGGTGCGAGGCGATT
GGCCGGCCGCACCTGGCCGAGGCCCTGCAGTACCGGCCAGGGAGCAGTTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7V8EB98

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

56.713

100

0.571
  comM Haemophilus influenzae Rd KW20

55.6

100

0.56
  comM Vibrio cholerae strain A1552

55.96

99.798

0.558
  comM Glaesserella parasuis strain SC1401

53.693

100

0.542
  comM Legionella pneumophila str. Paris

48.992

100

0.49
  comM Legionella pneumophila strain ERS1305867

48.992

100

0.49
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.733

100

0.476