Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   L6411_RS03230 Genome accession   NZ_AP025333
Coordinates   656037..656975 (+) Length   312 a.a.
NCBI ID   WP_155962630.1    Uniprot ID   -
Organism   Streptococcus ruminantium strain GUT-189     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 651037..661975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6411_RS03215 (GUT189_05860) - 651705..652307 (+) 603 WP_227985557.1 DUF3885 domain-containing protein -
  L6411_RS03220 (GUT189_05870) - 653121..653717 (-) 597 WP_024533046.1 DUF1361 domain-containing protein -
  L6411_RS03225 (GUT189_05880) metG 653969..655972 (+) 2004 WP_237374381.1 methionine--tRNA ligase -
  L6411_RS03230 (GUT189_05890) coiA 656037..656975 (+) 939 WP_155962630.1 competence protein CoiA Machinery gene
  L6411_RS03235 (GUT189_05900) pepF 657048..658850 (+) 1803 WP_155964502.1 oligoendopeptidase F Regulator
  L6411_RS03240 - 659046..659294 (+) 249 WP_227990639.1 hypothetical protein -
  L6411_RS03245 (GUT189_05920) - 659308..659856 (+) 549 WP_155964503.1 DUF6630 family protein -
  L6411_RS03250 (GUT189_05930) - 659934..660653 (+) 720 WP_024531731.1 O-methyltransferase -
  L6411_RS03255 (GUT189_05940) - 660715..661713 (+) 999 WP_237374383.1 peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 36306.81 Da        Isoelectric Point: 9.1908

>NTDB_id=91238 L6411_RS03230 WP_155962630.1 656037..656975(+) (coiA) [Streptococcus ruminantium strain GUT-189]
MLVAINENGLLFNLLENPAPQGSFNCPGCGGPVRYKSGKVLRSHFAHVTLRDCHYFSENESAQHLSLKSYLYNWLIEHNK
VELEKCLPNLGQVADLFVNNHLALEVQCSSLSISRLQERTSSYHKSGFQVLWLLGKDLWLKDRLSKLHKQFLSFSLNMGF
YLWELDDEKQELRLHYLIHEDLRGRVHSLTKRFAFGQGNLLDILRLPFTKQSLSRMTCPIDNHLPQYIAQQLYYKSPKWL
TLQAEAYCQGDNLLTKTALDWYPHIRLPSSAIGFAQIRKNLAPIYQAFDRFYKKTKAQKEQVLYSPAYYCQK

Nucleotide


Download         Length: 939 bp        

>NTDB_id=91238 L6411_RS03230 WP_155962630.1 656037..656975(+) (coiA) [Streptococcus ruminantium strain GUT-189]
ATGCTTGTTGCTATCAATGAAAACGGCTTGTTGTTTAATCTTTTAGAAAATCCTGCGCCGCAAGGCTCATTCAACTGTCC
AGGCTGTGGTGGTCCTGTACGATATAAATCCGGAAAAGTTCTGCGTTCGCACTTTGCTCACGTTACTCTGCGGGATTGTC
ATTACTTCTCCGAGAATGAGTCCGCCCAGCACCTATCGCTCAAGTCTTATCTGTATAACTGGTTGATTGAACACAATAAG
GTAGAGCTTGAAAAATGTTTACCAAACTTGGGACAGGTCGCAGATCTATTTGTCAATAATCATCTGGCCCTAGAAGTCCA
GTGTTCTAGTCTATCTATTTCACGTTTGCAAGAACGAACAAGTTCTTATCATAAGTCAGGTTTTCAGGTATTGTGGCTGC
TAGGAAAAGACCTCTGGCTTAAAGACAGGCTTTCCAAACTACATAAGCAATTTCTCTCCTTCAGTCTTAATATGGGGTTT
TACTTATGGGAATTGGATGATGAAAAGCAGGAATTGCGACTTCATTATCTCATTCATGAAGATCTGCGTGGTAGGGTGCA
TTCCCTGACCAAGAGATTTGCATTTGGTCAGGGAAACCTGTTAGATATTTTGCGGCTACCTTTCACCAAGCAGAGTCTAT
CTAGGATGACCTGTCCGATAGACAATCATCTACCTCAATATATCGCCCAGCAGCTTTATTATAAATCTCCTAAATGGTTG
ACTCTACAGGCTGAAGCTTATTGCCAAGGTGACAATCTACTAACAAAGACCGCTCTGGATTGGTATCCCCACATCCGCCT
TCCAAGCTCTGCTATTGGCTTTGCCCAAATCAGAAAAAATCTAGCTCCAATCTACCAAGCTTTTGATAGATTTTATAAAA
AAACGAAAGCTCAGAAGGAACAAGTCCTGTATTCACCGGCCTACTACTGCCAGAAATAG

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-233)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

50.962

100

0.51
  coiA Streptococcus pneumoniae TIGR4

50

100

0.5
  coiA Streptococcus pneumoniae Rx1

50

100

0.5
  coiA Streptococcus pneumoniae D39

50

100

0.5
  coiA Streptococcus pneumoniae R6

50

100

0.5
  coiA Lactococcus lactis subsp. cremoris KW2

42.679

100

0.439

Multiple sequence alignment