Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   L6411_RS03235 Genome accession   NZ_AP025333
Coordinates   657048..658850 (+) Length   600 a.a.
NCBI ID   WP_155964502.1    Uniprot ID   -
Organism   Streptococcus ruminantium strain GUT-189     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 652048..663850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6411_RS03220 (GUT189_05870) - 653121..653717 (-) 597 WP_024533046.1 DUF1361 domain-containing protein -
  L6411_RS03225 (GUT189_05880) metG 653969..655972 (+) 2004 WP_237374381.1 methionine--tRNA ligase -
  L6411_RS03230 (GUT189_05890) coiA 656037..656975 (+) 939 WP_155962630.1 competence protein CoiA Machinery gene
  L6411_RS03235 (GUT189_05900) pepF 657048..658850 (+) 1803 WP_155964502.1 oligoendopeptidase F Regulator
  L6411_RS03240 - 659046..659294 (+) 249 WP_227990639.1 hypothetical protein -
  L6411_RS03245 (GUT189_05920) - 659308..659856 (+) 549 WP_155964503.1 DUF6630 family protein -
  L6411_RS03250 (GUT189_05930) - 659934..660653 (+) 720 WP_024531731.1 O-methyltransferase -
  L6411_RS03255 (GUT189_05940) - 660715..661713 (+) 999 WP_237374383.1 peptidylprolyl isomerase -
  L6411_RS03260 (GUT189_05950) - 661914..662399 (+) 486 WP_237374385.1 LURP-one-related/scramblase family protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69413.75 Da        Isoelectric Point: 4.7005

>NTDB_id=91239 L6411_RS03235 WP_155964502.1 657048..658850(+) (pepF) [Streptococcus ruminantium strain GUT-189]
MSKQRHEIEEKYQWDLTTIFPTDEAWEEEYIALQAETEKTKDFAGHLLDSAKSLLEISETQLGLMRRIEKLYVYASMKND
QDTREGKYQEFQAKAISLYSAFSQAFAFYEPEFMAITEEQLTAFKTKEPALIQYNHQFEKLLAAKDHVLSQEVEEVLAAT
SEIFESPAETFSVLDNASLRFPEIADENGNLVPLSHGNYIHFMESKNREVRQEAYEAMYGTYEQFQHTYAKTLQSNVKVN
NLKARLRKYDSARHAALAANFIPESVYDTLVSAVNKHLPLLHRYINLRKKLLGIDDLKMYDMYAPLSDFSTKISYEDALK
KCQETLEIFGEDYSTIVKEAFENRWIDVHVNEGKRSGAYSGGAYDTNAFMLLNWQDNLDNMFTLIHETGHSLHSMLTRRT
QPYVYGHYTLFLAEIASTTNENLLTEKLLAEVKDDKERFAILNHYLDGFRGTVFRQTQFAEFEQAIYKADQEGQVLTADF
LNELYGKMNEKYYGLSAEDNPEIQYEWARIPHFYYNFYVYQYATGFAAASALANKIVNGSPEDKENYLNYLKAGSSDYSL
NVIAKAGVDMTKEDYLNDAFKVFEARLEELEELVERGVHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=91239 L6411_RS03235 WP_155964502.1 657048..658850(+) (pepF) [Streptococcus ruminantium strain GUT-189]
ATGTCAAAACAACGTCATGAGATTGAAGAAAAATATCAGTGGGATCTAACCACTATTTTCCCAACCGATGAAGCTTGGGA
GGAAGAATATATTGCCCTACAGGCTGAAACAGAAAAGACCAAAGATTTTGCAGGACATTTGTTGGACTCTGCTAAAAGTC
TTTTAGAGATTAGCGAGACCCAGCTTGGTTTGATGCGCCGTATCGAAAAACTGTATGTTTATGCTTCTATGAAGAACGAC
CAAGATACTCGTGAAGGGAAATACCAAGAATTTCAAGCCAAAGCTATCAGCCTCTATTCTGCTTTTTCACAAGCTTTTGC
TTTTTACGAGCCAGAATTTATGGCGATTACAGAAGAGCAGTTGACAGCTTTCAAGACTAAGGAACCAGCCTTGATTCAAT
ACAATCACCAATTTGAAAAGCTGTTAGCCGCAAAAGATCATGTTCTATCTCAAGAAGTAGAAGAAGTTCTAGCTGCAACC
AGTGAAATTTTTGAATCCCCAGCAGAAACCTTCTCGGTCTTAGATAATGCCAGTTTGCGTTTCCCTGAAATTGCAGATGA
AAATGGCAATCTAGTGCCTCTGTCGCACGGTAATTACATCCATTTTATGGAGTCTAAAAATCGTGAAGTTCGTCAGGAAG
CCTATGAAGCCATGTACGGAACCTATGAGCAGTTCCAGCATACCTATGCAAAGACACTTCAGTCCAATGTCAAGGTCAAT
AACCTGAAAGCTCGTTTGCGTAAGTACGATTCGGCTCGCCACGCAGCACTTGCAGCTAATTTTATTCCAGAATCTGTCTA
TGATACATTGGTATCAGCTGTCAATAAGCACCTTCCTCTACTTCATCGTTATATCAACTTGCGTAAGAAACTCTTGGGAA
TTGATGACCTCAAGATGTACGACATGTACGCCCCCTTGTCCGATTTTAGTACAAAGATTTCTTATGAGGATGCACTCAAA
AAATGTCAAGAAACGTTGGAAATTTTTGGTGAAGACTACTCAACTATTGTTAAAGAAGCCTTTGAAAATCGCTGGATTGA
TGTTCATGTTAACGAAGGAAAGCGTTCAGGAGCTTATTCAGGTGGCGCCTATGATACCAATGCCTTCATGTTGCTCAACT
GGCAGGACAACTTGGATAACATGTTTACTTTGATTCACGAAACAGGTCACTCCCTTCATTCCATGCTGACTCGTAGAACC
CAGCCTTATGTCTATGGACATTACACTCTCTTCTTGGCAGAAATTGCTTCAACTACCAACGAGAACCTCCTCACTGAAAA
GCTCTTGGCAGAAGTGAAGGACGATAAGGAGCGCTTTGCAATCCTCAACCACTATTTGGATGGTTTCCGTGGCACAGTAT
TCCGTCAGACTCAATTTGCTGAGTTTGAACAAGCTATCTATAAAGCCGACCAAGAAGGGCAGGTTTTGACTGCTGACTTC
CTCAATGAGTTGTACGGTAAGATGAATGAGAAATATTATGGACTTTCTGCGGAAGACAATCCTGAAATCCAGTATGAATG
GGCACGCATTCCGCACTTCTATTACAATTTCTATGTTTACCAGTATGCAACAGGCTTTGCAGCGGCATCAGCCCTTGCCA
ATAAGATTGTCAATGGAAGCCCAGAAGACAAGGAAAACTACCTAAACTATCTGAAGGCTGGTAGTTCCGATTATTCTCTA
AATGTTATCGCCAAAGCTGGTGTGGATATGACTAAAGAAGACTACCTAAATGACGCTTTCAAGGTCTTTGAAGCTCGCTT
GGAGGAACTTGAAGAGCTTGTCGAAAGAGGAGTACATCTCTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

69.833

100

0.698

Multiple sequence alignment