Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   U0040_RS15475 Genome accession   NZ_CP140003
Coordinates   3123175..3124662 (+) Length   495 a.a.
NCBI ID   WP_114836632.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain HAMBI_0097     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 3118175..3129662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0040_RS15450 (U0040_15445) ribD 3119077..3120180 (-) 1104 WP_114836631.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  U0040_RS15455 (U0040_15450) nrdR 3120195..3120653 (-) 459 WP_004692852.1 transcriptional regulator NrdR -
  U0040_RS15460 (U0040_15455) - 3120805..3122208 (-) 1404 WP_010325684.1 ammonium transporter -
  U0040_RS15465 (U0040_15460) glnK 3122268..3122606 (-) 339 WP_004281042.1 P-II family nitrogen regulator -
  U0040_RS15470 (U0040_15465) - 3122882..3123109 (+) 228 WP_004692854.1 accessory factor UbiK family protein -
  U0040_RS15475 (U0040_15470) comM 3123175..3124662 (+) 1488 WP_114836632.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  U0040_RS15480 (U0040_15475) - 3124771..3125514 (-) 744 WP_004692873.1 TorF family putative porin -
  U0040_RS15485 (U0040_15480) - 3125861..3126631 (-) 771 WP_114836633.1 TorF family putative porin -
  U0040_RS15490 (U0040_15485) - 3127091..3128383 (+) 1293 WP_114836655.1 OprD family outer membrane porin -
  U0040_RS15495 (U0040_15490) ppa 3128487..3129011 (-) 525 WP_114836634.1 inorganic diphosphatase -
  U0040_RS15500 (U0040_15495) - 3129130..3129534 (-) 405 WP_114836635.1 MAPEG family protein -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54480.33 Da        Isoelectric Point: 7.8149

>NTDB_id=912367 U0040_RS15475 WP_114836632.1 3123175..3124662(+) (comM) [Acinetobacter johnsonii strain HAMBI_0097]
MSFSKIYTRALLGLHAPSVEVEVHLSQGLPSLTIVGLPEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDSSR
LDLPIALGILIASGQLPEHGTENFEFIGELALDGQLRPISGTLSIAIACQQAGHQLILPEANAQEASQLPNFQVFAAQHL
KQVCEHLSQNHLIQQFQPTALKASQHYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLASILPPLNT
QENLEVASIYSVANHQHPFGQRPFRAPHHTASAVALVGGGSQPKPGEITLAHKGVLFLDELPEFDRKVLEVLRQPIEAKE
IVISRASRQITFPANFQLIAAMNPCPCGYAFNQDSRCQCSAEAIKRYQNRISGPLLDRIDLHIDVPPLHASELQDTQVVE
DSATVRERVIQAYQWQMQRQACLNMALSPKQLEQFAPLDEQAALIFEKAQQRLNLSARGYHRILRVARTIADLAQSEQIQ
TGHLTEALSYRGQHH

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=912367 U0040_RS15475 WP_114836632.1 3123175..3124662(+) (comM) [Acinetobacter johnsonii strain HAMBI_0097]
ATGTCTTTTTCCAAAATTTACACTCGAGCTTTGCTCGGTTTACACGCACCTTCGGTTGAAGTTGAAGTTCATCTGAGCCA
AGGACTACCCTCTTTAACCATTGTGGGGCTTCCTGAAGCAGCCGTTCGGGAAAGTAAAGATCGGGTGCGCTCCGCCATTA
TCAATAGTGGCTTTCAGTTTCCGACCAAACGCCTCACTATCAACCTTGCGCCCGCAGATCTGCCCAAAGACAGCTCACGA
CTGGATTTGCCTATTGCACTGGGTATTTTAATTGCCTCTGGTCAGCTCCCTGAGCATGGAACTGAAAATTTTGAATTTAT
AGGTGAGTTGGCACTTGATGGGCAACTGCGACCAATTTCAGGTACTTTAAGTATTGCGATTGCCTGCCAGCAAGCTGGGC
ATCAACTGATTTTACCTGAGGCCAATGCGCAAGAAGCCTCTCAACTGCCCAACTTTCAAGTGTTTGCAGCGCAACATTTA
AAACAAGTCTGTGAGCATCTGTCGCAAAACCATCTCATCCAACAGTTTCAGCCCACGGCGCTAAAAGCCTCTCAGCACTA
CAAATTTGATTTGGCCGATGTTAAAGGTCAACTGCGTCCAAGACGCGCCTTAGAGATTGCGGCAGCAGGTGGTCATTCTT
TACTGTTTAAAGGGCCACCAGGGACAGGAAAAACCCTATTGGCTTCACGTTTAGCCAGTATTCTACCGCCCCTGAACACA
CAAGAAAATTTGGAAGTAGCGAGTATTTACTCGGTGGCCAATCATCAACATCCTTTTGGACAGCGGCCATTTCGTGCACC
GCACCATACAGCTTCTGCAGTTGCCCTAGTCGGTGGCGGGTCACAACCCAAACCCGGTGAAATTACTTTGGCACATAAAG
GCGTGCTGTTTTTAGATGAACTACCAGAGTTTGACCGCAAGGTGTTGGAGGTTTTAAGACAGCCGATTGAAGCCAAAGAG
ATTGTGATTTCGCGTGCTTCACGACAGATCACCTTTCCAGCCAATTTCCAACTGATTGCTGCAATGAATCCGTGTCCCTG
TGGTTATGCTTTTAATCAAGATAGCCGTTGTCAGTGCTCAGCCGAGGCGATTAAACGCTACCAAAACCGCATTTCAGGGC
CGTTACTGGATCGGATTGATTTACATATTGATGTACCACCCTTGCATGCATCTGAATTGCAGGACACACAAGTCGTAGAA
GACTCGGCAACTGTACGTGAGCGCGTGATTCAAGCTTATCAATGGCAAATGCAGCGCCAAGCTTGTCTCAATATGGCTTT
ATCACCCAAACAACTCGAACAATTCGCACCGCTAGATGAACAAGCCGCGCTGATCTTTGAAAAGGCACAACAGCGCTTAA
ACTTATCTGCTCGGGGGTATCACCGTATTTTAAGAGTGGCCAGAACCATTGCCGACTTAGCGCAGTCTGAACAGATTCAA
ACAGGCCACTTAACCGAAGCCCTGTCTTATCGTGGGCAACATCACTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

51.503

100

0.519
  comM Glaesserella parasuis strain SC1401

50.902

100

0.513
  comM Vibrio campbellii strain DS40M4

51.111

100

0.511
  comM Vibrio cholerae strain A1552

50.905

100

0.511
  comM Legionella pneumophila str. Paris

50.2

100

0.507
  comM Legionella pneumophila strain ERS1305867

50.2

100

0.507
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.123

100

0.469