NTDB

Overview

Name	xcpW	Type	Machinery gene
Locus tag	U0040_RS09295	Genome accession	NZ_CP140003
Coordinates	1889130..1889750 (-)	Length	206 a.a.
NCBI ID	WP_114836891.1	Uniprot ID	A0AAV3WAC6
Organism	Acinetobacter johnsonii strain HAMBI_0097
Function	pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1884130..1894750

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
U0040_RS09265 (U0040_09265)	-	1884217..1884573 (-)	357	Protein_1798	enoyl-CoA hydratase/isomerase family protein	-
U0040_RS09270 (U0040_09270)	-	1884661..1885790 (+)	1130	WP_178928550.1	IS3-like element ISAcsp5 family transposase	-
U0040_RS09275 (U0040_09275)	-	1885827..1886630 (-)	804	Protein_1800	enoyl-CoA hydratase/isomerase family protein	-
U0040_RS09280 (U0040_09280)	ung	1886627..1887340 (-)	714	WP_004696856.1	uracil-DNA glycosylase	-
U0040_RS09285 (U0040_09285)	-	1887382..1887978 (-)	597	WP_004696854.1	6-pyruvoyl trahydropterin synthase family protein	-
U0040_RS09290 (U0040_09290)	gspK	1888101..1889051 (-)	951	WP_114836890.1	type II secretion system minor pseudopilin GspK	-
U0040_RS09295 (U0040_09295)	xcpW	1889130..1889750 (-)	621	WP_114836891.1	type II secretion system minor pseudopilin GspJ	Machinery gene
U0040_RS09300 (U0040_09300)	xcpV	1889747..1890097 (-)	351	WP_406935391.1	type II secretion system protein	Machinery gene
U0040_RS09305 (U0040_09305)	-	1890225..1890794 (-)	570	WP_078388685.1	type II secretion system protein	-
U0040_RS09310 (U0040_09310)	-	1890807..1891421 (-)	615	WP_114836892.1	TetR/AcrR family transcriptional regulator	-
U0040_RS09315 (U0040_09315)	-	1891467..1892240 (-)	774	WP_078425022.1	TatD family hydrolase	-
U0040_RS09320 (U0040_09320)	-	1892267..1892608 (-)	342	WP_114836893.1	PilZ domain-containing protein	-
U0040_RS09325 (U0040_09325)	-	1892623..1893606 (-)	984	WP_078425020.1	DNA polymerase III subunit delta' C-terminal domain-containing protein	-
U0040_RS09330 (U0040_09330)	kdsB	1893626..1894387 (-)	762	WP_114836894.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

Download Length: 206 a.a. Molecular weight: 23591.17 Da Isoelectric Point: 5.3491

                                >NTDB_id=912349 U0040_RS09295 WP_114836891.1 1889130..1889750(-) (xcpW) [Acinetobacter johnsonii strain HAMBI_0097]

MTKRSGFTLVELLVAIAIFVVLSALGWKVFDYLIKIKERNTQHEQRLGQLQEAYQQVLRDTVQIVPITANVAGQVQPAVM

LQNGQLTFSKTGVTDPLMQGIPPEERVEYIYKADEKKLYRYKYKNLNQTGNDQPETSVLLDSVDQFQIMLLNPNEMAQWP

EVALSENDVTQAKILPRGLKINLTVNEVSYEWVFSLLNTDFLKQKN

Nucleotide

Download Length: 621 bp

                                >NTDB_id=912349 U0040_RS09295 WP_114836891.1 1889130..1889750(-) (xcpW) [Acinetobacter johnsonii strain HAMBI_0097]

ATGACAAAACGCTCAGGCTTTACTTTGGTTGAGTTATTGGTGGCAATCGCGATTTTTGTTGTGCTTTCAGCTTTGGGTTG

GAAGGTTTTTGATTATCTGATCAAGATTAAAGAGCGAAATACCCAACATGAACAACGCTTAGGTCAGCTACAAGAAGCAT

ATCAGCAAGTGTTACGTGACACGGTGCAAATTGTACCAATTACTGCCAATGTTGCGGGGCAGGTTCAACCCGCAGTCATG

TTGCAAAATGGTCAGTTAACCTTTAGTAAAACTGGCGTGACTGATCCTTTGATGCAAGGCATACCGCCTGAAGAGCGAGT

TGAATATATTTATAAAGCAGATGAAAAAAAACTGTACCGTTATAAATATAAAAATTTAAATCAAACAGGTAATGATCAAC

CTGAAACCAGTGTTCTACTTGATTCAGTTGATCAATTTCAAATTATGTTACTCAATCCCAATGAAATGGCACAATGGCCT

GAGGTGGCATTGAGTGAAAATGATGTGACTCAGGCAAAAATACTACCGCGCGGTTTAAAAATAAACCTCACTGTCAATGA

AGTGAGTTATGAATGGGTGTTTAGTTTATTAAATACAGACTTTTTAAAACAAAAAAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-25)

Type II secretion system (T2SS), protein J (T2SSJ)

(59-188)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
xcpW	Acinetobacter baumannii D1279779	58.209	97.573	0.568

Detailed information NTG0912349